{"version": "2.1.0", "$schema": "https://json.schemastore.org/sarif-2.1.0.json", "runs": [{"tool": {"driver": {"name": "Repobility", "informationUri": "https://repobility.com", "rules": [{"id": "scanner-d8167871cf556486", "name": "Possibly dead Python function: checkConsolidation", "shortDescription": {"text": "Possibly dead Python function: checkConsolidation"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-e8c82503ac0701d0", "name": "Possibly dead Python function: checkReequilib", "shortDescription": {"text": "Possibly dead Python function: checkReequilib"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-5976d075cd074250", "name": "Possibly dead Python function: recordData", "shortDescription": {"text": "Possibly dead Python function: recordData"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-bc579e760f749b3f", "name": "Possibly dead Python function: run_server_background", "shortDescription": {"text": "Possibly dead Python function: run_server_background"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-9bff0c81ee474019", "name": "Possibly dead Python function: log_message", "shortDescription": {"text": "Possibly dead Python function: log_message"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-f4e4f50e1979949e", "name": "Possibly dead Python function: do_POST", "shortDescription": {"text": "Possibly dead Python function: do_POST"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-faa19e8ffb4483ea", "name": "Possibly dead Python function: do_GET", "shortDescription": {"text": "Possibly dead Python function: do_GET"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-04f0c12988703cea", "name": "Possibly dead Python function: readable", "shortDescription": {"text": "Possibly dead Python function: readable"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-c08f4aa1e7bd506d", "name": "Possibly dead Python function: writable", "shortDescription": {"text": "Possibly dead Python function: writable"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-35ff11b1ce4945ca", "name": "Possibly dead Python function: seekable", "shortDescription": {"text": "Possibly dead Python function: seekable"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-c00eb746023bd826", "name": "Possibly dead Python function: normalize_input", "shortDescription": {"text": "Possibly dead Python function: normalize_input"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-ad5c03a051d03506", "name": "Possibly dead Python function: validate_script_path", "shortDescription": {"text": "Possibly dead Python function: validate_script_path"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-8c8ea43de938c0d5", "name": "Possibly dead Python function: validate_task_description", "shortDescription": {"text": "Possibly dead Python function: validate_task_description"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-d63da3583b14afc0", "name": "Dockerfile runs as root: Dockerfile", "shortDescription": {"text": "Dockerfile runs as root: Dockerfile"}, "fullDescription": {"text": "No non-root USER set. Containers running as root expand the blast radius of any vulnerability inside the image."}, "properties": {"scanner": "scanner-primary", "layer": "hardware", "severity": "medium", "confidence": 1.0}}, {"id": "scanner-de3c1f217d72a063", "name": "Docker base image is tag-pinned but not digest-pinned: python:3.12-slim", "shortDescription": {"text": "Docker base image is tag-pinned but not digest-pinned: python:3.12-slim"}, "fullDescription": {"text": "Container tags can be retagged upstream. Pin production base images to a reviewed digest (`image@sha256:...`) when reproducibility and supply-chain integrity matter."}, "properties": {"scanner": "scanner-primary", "layer": "hardware", "severity": "low", "confidence": 1.0}}, {"id": "scanner-aa5acaa49eb8315b", "name": "Containers defined but no K8s/orchestration manifest found", "shortDescription": {"text": "Containers defined but no K8s/orchestration manifest found"}, "fullDescription": {"text": "Repo has Dockerfiles/compose but no Kubernetes/Nomad manifests. If the target deployment is K8s, the manifests may live in a separate ops repo."}, "properties": {"scanner": "scanner-primary", "layer": "hardware", "severity": "low", "confidence": 1.0}}, {"id": "scanner-9710c8d059e53154", "name": "No frontend routes/components detected", "shortDescription": {"text": "No frontend routes/components detected"}, "fullDescription": {"text": "No React/Vue/Next routes were found. This is fine for backend-only repos."}, "properties": {"scanner": "scanner-primary", "layer": "frontend", "severity": "info", "confidence": 1.0}}, {"id": "scanner-357188a0ec14cdc1", "name": "Insecure pattern 'eval_used' in yade-mcp-bridge/src/yade_mcp_bridge/execution/script.py:76", "shortDescription": {"text": "Insecure pattern 'eval_used' in yade-mcp-bridge/src/yade_mcp_bridge/execution/script.py:76"}, "fullDescription": {"text": "Found a known-risky pattern (eval_used). Review and replace if possible."}, "properties": {"scanner": "scanner-primary", "layer": "security", "severity": "high", "confidence": 1.0}}, {"id": "scanner-4e3e278c8b8b6c47", "name": "Insecure pattern 'exec_used' in yade-mcp-bridge/src/yade_mcp_bridge/execution/script.py:79", "shortDescription": {"text": "Insecure pattern 'exec_used' in yade-mcp-bridge/src/yade_mcp_bridge/execution/script.py:79"}, "fullDescription": {"text": "Found a known-risky pattern (exec_used). Review and replace if possible."}, "properties": {"scanner": "scanner-primary", "layer": "security", "severity": "high", "confidence": 1.0}}, {"id": "scanner-c41424719f66cb5a", "name": "Insecure pattern 'eval_used' in yade-mcp-bridge/src/yade_mcp_bridge/handlers/execute_code.py:311", "shortDescription": {"text": "Insecure pattern 'eval_used' in yade-mcp-bridge/src/yade_mcp_bridge/handlers/execute_code.py:311"}, "fullDescription": {"text": "Found a known-risky pattern (eval_used). Review and replace if possible."}, "properties": {"scanner": "scanner-primary", "layer": "security", "severity": "high", "confidence": 1.0}}, {"id": "scanner-eec3b4bc1a354387", "name": "Insecure pattern 'exec_used' in yade-mcp-bridge/src/yade_mcp_bridge/handlers/execute_code.py:314", "shortDescription": {"text": "Insecure pattern 'exec_used' in yade-mcp-bridge/src/yade_mcp_bridge/handlers/execute_code.py:314"}, "fullDescription": {"text": "Found a known-risky pattern (exec_used). Review and replace if possible."}, "properties": {"scanner": "scanner-primary", "layer": "security", "severity": "high", "confidence": 1.0}}, {"id": "scanner-2f90a0847f8f1fcc", "name": "GitHub Actions workflow grants broad write permissions", "shortDescription": {"text": "GitHub Actions workflow grants broad write permissions"}, "fullDescription": {"text": "CI tokens with write permissions increase blast radius when an action, dependency, or PR workflow is compromised. Prefer job-level least-privilege permissions."}, "properties": {"scanner": "scanner-primary", "layer": "cicd", "severity": "medium", "confidence": 1.0}}, {"id": "scanner-1838a141491ce38c", "name": "GitHub Actions workflow grants broad write permissions", "shortDescription": {"text": "GitHub Actions workflow grants broad write permissions"}, "fullDescription": {"text": "CI tokens with write permissions increase blast radius when an action, dependency, or PR workflow is compromised. Prefer job-level least-privilege permissions."}, "properties": {"scanner": "scanner-primary", "layer": "cicd", "severity": "medium", "confidence": 1.0}}, {"id": "scanner-3ab5d313dda8e5f9", "name": "Debug logging residue appears in source files", "shortDescription": {"text": "Debug logging residue appears in source files"}, "fullDescription": {"text": "Found 33 console/debugger/print-style debug statements in non-test source. This is a common fast-generation residue before production cleanup."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "low", "confidence": 1.0}}, {"id": "scanner-ea8f3013f588db25", "name": "Shallow git history limits provenance confidence", "shortDescription": {"text": "Shallow git history limits provenance confidence"}, "fullDescription": {"text": "The repository is a shallow clone. Origin/evolution analysis cannot distinguish fresh generation, imported legacy code, or long-lived human code with high confidence."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "low", "confidence": 1.0}}, {"id": "scanner-8424db9c75e04ba4", "name": "Very short observed git history", "shortDescription": {"text": "Very short observed git history"}, "fullDescription": {"text": "The repo has multiple source files but two or fewer visible commits. This is not a failure by itself, but it lowers confidence in evolution-based diagnosis."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-e725d2ab884fbd49", "name": "Multiple root agent instruction files without precedence", "shortDescription": {"text": "Multiple root agent instruction files without precedence"}, "fullDescription": {"text": "The repo has multiple top-level AI-coder instruction files. Without precedence rules, different agents may follow different policies."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "low", "confidence": 1.0}}, {"id": "scanner-f72eb8dd5a2a43a1", "name": "Legacy-named symbol `test_build_returns_copy` in tests/bridge/test_utils.py:88", "shortDescription": {"text": "Legacy-named symbol `test_build_returns_copy` in tests/bridge/test_utils.py:88"}, "fullDescription": {"text": "Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "low", "confidence": 1.0}}, {"id": "scanner-8d0d4a9cf4c96ea3", "name": "Commented-code block (5 lines) in tests/bridge/test_protocol.py:484", "shortDescription": {"text": "Commented-code block (5 lines) in tests/bridge/test_protocol.py:484"}, "fullDescription": {"text": "A long run of `//` or `#` lines usually means abandoned code. Delete or move to git history. Keeps the canvas + dead-code detection honest."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-39223ca4bf775924", "name": "Commented-code block (6 lines) in showcase/triaxial/triaxial_drained_shear.py:43", "shortDescription": {"text": "Commented-code block (6 lines) in showcase/triaxial/triaxial_drained_shear.py:43"}, "fullDescription": {"text": "A long run of `//` or `#` lines usually means abandoned code. Delete or move to git history. Keeps the canvas + dead-code detection honest."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-5a415bebd95a4d3d", "name": "Commented-code block (5 lines) in scripts/refresh_api_docs.py:92", "shortDescription": {"text": "Commented-code block (5 lines) in scripts/refresh_api_docs.py:92"}, "fullDescription": {"text": "A long run of `//` or `#` lines usually means abandoned code. Delete or move to git history. Keeps the canvas + dead-code detection honest."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-caec5fa150f1004a", "name": "Network/subprocess call without timeout or try/except \u2014 scripts/restructure_docs.py:169", "shortDescription": {"text": "Network/subprocess call without timeout or try/except \u2014 scripts/restructure_docs.py:169"}, "fullDescription": {"text": "`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "medium", "confidence": 1.0}}, {"id": "scanner-ae6c82a958a4de08", "name": "Commented-code block (6 lines) in yade-mcp-bridge/src/yade_mcp_bridge/utils/response.py:21", "shortDescription": {"text": "Commented-code block (6 lines) in yade-mcp-bridge/src/yade_mcp_bridge/utils/response.py:21"}, "fullDescription": {"text": "A long run of `//` or `#` lines usually means abandoned code. Delete or move to git history. Keeps the canvas + dead-code detection honest."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-0f8f7e12855eaf14", "name": "Commented-code block (5 lines) in yade-mcp-bridge/src/yade_mcp_bridge/execution/script.py:82", "shortDescription": {"text": "Commented-code block (5 lines) in yade-mcp-bridge/src/yade_mcp_bridge/execution/script.py:82"}, "fullDescription": {"text": "A long run of `//` or `#` lines usually means abandoned code. Delete or move to git history. Keeps the canvas + dead-code detection honest."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-5b9f0aec7adf46c9", "name": "Commented-code block (5 lines) in yade-mcp-bridge/src/yade_mcp_bridge/runtime/pyrunner.py:15", "shortDescription": {"text": "Commented-code block (5 lines) in yade-mcp-bridge/src/yade_mcp_bridge/runtime/pyrunner.py:15"}, "fullDescription": {"text": "A long run of `//` or `#` lines usually means abandoned code. Delete or move to git history. Keeps the canvas + dead-code detection honest."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-908a380e1bb9c496", "name": "Commented-code block (6 lines) in yade-mcp-bridge/src/yade_mcp_bridge/runtime/signals.py:18", "shortDescription": {"text": "Commented-code block (6 lines) in yade-mcp-bridge/src/yade_mcp_bridge/runtime/signals.py:18"}, "fullDescription": {"text": "A long run of `//` or `#` lines usually means abandoned code. Delete or move to git history. Keeps the canvas + dead-code detection honest."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-c478c45e12fec7a0", "name": "Commented-code block (5 lines) in yade-mcp-bridge/src/yade_mcp_bridge/handlers/execute_code.py:35", "shortDescription": {"text": "Commented-code block (5 lines) in yade-mcp-bridge/src/yade_mcp_bridge/handlers/execute_code.py:35"}, "fullDescription": {"text": "A long run of `//` or `#` lines usually means abandoned code. Delete or move to git history. Keeps the canvas + dead-code detection honest."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-2f8249d68e3d9036", "name": "Commented-code block (5 lines) in yade-mcp-bridge/src/yade_mcp_bridge/handlers/tasks.py:161", "shortDescription": {"text": "Commented-code block (5 lines) in yade-mcp-bridge/src/yade_mcp_bridge/handlers/tasks.py:161"}, "fullDescription": {"text": "A long run of `//` or `#` lines usually means abandoned code. Delete or move to git history. Keeps the canvas + dead-code detection honest."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-4c0db579339bb6e0", "name": "Commented-code block (5 lines) in src/yade_mcp/contracts.py:17", "shortDescription": {"text": "Commented-code block (5 lines) in src/yade_mcp/contracts.py:17"}, "fullDescription": {"text": "A long run of `//` or `#` lines usually means abandoned code. Delete or move to git history. Keeps the canvas + dead-code detection honest."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-bb150826bb295b05", "name": "Commented-code block (6 lines) in src/yade_mcp/tools/check_task_status.py:122", "shortDescription": {"text": "Commented-code block (6 lines) in src/yade_mcp/tools/check_task_status.py:122"}, "fullDescription": {"text": "A long run of `//` or `#` lines usually means abandoned code. Delete or move to git history. Keeps the canvas + dead-code detection honest."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-2c04133e54348533", "name": "Near-duplicate function bodies in 2 places", "shortDescription": {"text": "Near-duplicate function bodies in 2 places"}, "fullDescription": {"text": "Functions with the same first-5-line body hash:\nyade-mcp-bridge/src/yade_mcp_bridge/utils/file_buffer.py:write, yade-mcp-bridge/src/yade_mcp_bridge/utils/file_buffer.py:write\n\nThis is *the* AI-coder failure mode (4\u00d7 more duplication in vibe-coded repos \u2014 see https://jw.hn/ai-code-hygiene). Consolidate or document why they're separate."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "low", "confidence": 1.0}}]}}, "automationDetails": {"id": "repobility/23441"}, "properties": {"repository": "yusong652/yade-mcp", "repoUrl": "https://github.com/yusong652/yade-mcp", "branch": "main"}, "results": [{"ruleId": "scanner-d8167871cf556486", "level": "note", "message": {"text": "Possibly dead Python function: checkConsolidation"}, "properties": {"repobilityId": "e47cc4d295482979", "scanner": "scanner-primary", "fingerprint": "d8167871cf556486", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "showcase/triaxial/triaxial_consolidation.py:91"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-e8c82503ac0701d0", "level": "note", "message": {"text": "Possibly dead Python function: checkReequilib"}, "properties": {"repobilityId": "b1d430a0080b645d", "scanner": "scanner-primary", "fingerprint": "e8c82503ac0701d0", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "showcase/triaxial/triaxial_reequilibrate.py:10"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-5976d075cd074250", "level": "note", "message": {"text": "Possibly dead Python function: recordData"}, "properties": {"repobilityId": "600d00fdee76a6f1", "scanner": "scanner-primary", "fingerprint": "5976d075cd074250", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "showcase/triaxial/triaxial_drained_shear.py:55"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-bc579e760f749b3f", "level": "note", "message": {"text": "Possibly dead Python function: run_server_background"}, "properties": {"repobilityId": "5a4181ce69b875a0", "scanner": "scanner-primary", "fingerprint": "bc579e760f749b3f", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "yade-mcp-bridge/src/yade_mcp_bridge/bootstrap.py:97"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-9bff0c81ee474019", "level": "note", "message": {"text": "Possibly dead Python function: log_message"}, "properties": {"repobilityId": "965f3150b4af5b2e", "scanner": "scanner-primary", "fingerprint": "9bff0c81ee474019", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "yade-mcp-bridge/src/yade_mcp_bridge/transport/server.py:74"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-f4e4f50e1979949e", "level": "note", "message": {"text": "Possibly dead Python function: do_POST"}, "properties": {"repobilityId": "53357410ca9379a9", "scanner": "scanner-primary", "fingerprint": "f4e4f50e1979949e", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "yade-mcp-bridge/src/yade_mcp_bridge/transport/server.py:100"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-faa19e8ffb4483ea", "level": "note", "message": {"text": "Possibly dead Python function: do_GET"}, "properties": {"repobilityId": "2d943bb45e4f13bd", "scanner": "scanner-primary", "fingerprint": "faa19e8ffb4483ea", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "yade-mcp-bridge/src/yade_mcp_bridge/transport/server.py:178"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-04f0c12988703cea", "level": "note", "message": {"text": "Possibly dead Python function: readable"}, "properties": {"repobilityId": "2f34e36e0a1e59e6", "scanner": "scanner-primary", "fingerprint": "04f0c12988703cea", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "yade-mcp-bridge/src/yade_mcp_bridge/console/capture.py:40"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-c08f4aa1e7bd506d", "level": "note", "message": {"text": "Possibly dead Python function: writable"}, "properties": {"repobilityId": "ffcb283a4174588b", "scanner": "scanner-primary", "fingerprint": "c08f4aa1e7bd506d", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "yade-mcp-bridge/src/yade_mcp_bridge/console/capture.py:43"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-35ff11b1ce4945ca", "level": "note", "message": {"text": "Possibly dead Python function: seekable"}, "properties": {"repobilityId": "e0bdecf86af432bb", "scanner": "scanner-primary", "fingerprint": "35ff11b1ce4945ca", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "yade-mcp-bridge/src/yade_mcp_bridge/console/capture.py:46"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-c00eb746023bd826", "level": "note", "message": {"text": "Possibly dead Python function: normalize_input"}, "properties": {"repobilityId": "27fb0805a6058aef", "scanner": "scanner-primary", "fingerprint": "c00eb746023bd826", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "src/yade_mcp/utils.py:31"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-ad5c03a051d03506", "level": "note", "message": {"text": "Possibly dead Python function: validate_script_path"}, "properties": {"repobilityId": "7a9e3c98f553be31", "scanner": "scanner-primary", "fingerprint": "ad5c03a051d03506", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "src/yade_mcp/utils.py:47"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-8c8ea43de938c0d5", "level": "note", "message": {"text": "Possibly dead Python function: validate_task_description"}, "properties": {"repobilityId": "c6fa3651a5052c76", "scanner": "scanner-primary", "fingerprint": "8c8ea43de938c0d5", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "src/yade_mcp/utils.py:55"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-d63da3583b14afc0", "level": "warning", "message": {"text": "Dockerfile runs as root: Dockerfile"}, "properties": {"repobilityId": "a2ed1bd120e507db", "scanner": "scanner-primary", "fingerprint": "d63da3583b14afc0", "layer": "hardware", "severity": "medium", "confidence": 1.0, "tags": ["security", "container"]}}, {"ruleId": "scanner-de3c1f217d72a063", "level": "note", "message": {"text": "Docker base image is tag-pinned but not digest-pinned: python:3.12-slim"}, "properties": {"repobilityId": "1de0ecd007803dbd", "scanner": "scanner-primary", "fingerprint": "de3c1f217d72a063", "layer": "hardware", "severity": "low", "confidence": 1.0, "tags": ["supply-chain", "docker", "pinned-dependencies"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "Dockerfile"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-aa5acaa49eb8315b", "level": "note", "message": {"text": "Containers defined but no K8s/orchestration manifest found"}, "properties": {"repobilityId": "b230ea9b68736081", "scanner": "scanner-primary", "fingerprint": "aa5acaa49eb8315b", "layer": "hardware", "severity": "low", "confidence": 1.0, "tags": ["coverage", "deployment"]}}, {"ruleId": "scanner-9710c8d059e53154", "level": "none", "message": {"text": "No frontend routes/components detected"}, "properties": {"repobilityId": "44ca61485762e494", "scanner": "scanner-primary", "fingerprint": "9710c8d059e53154", "layer": "frontend", "severity": "info", "confidence": 1.0, "tags": ["coverage"]}}, {"ruleId": "scanner-357188a0ec14cdc1", "level": "error", "message": {"text": "Insecure pattern 'eval_used' in yade-mcp-bridge/src/yade_mcp_bridge/execution/script.py:76"}, "properties": {"repobilityId": "cf1234a0cc5cb25a", "scanner": "scanner-primary", "fingerprint": "357188a0ec14cdc1", "layer": "security", "severity": "high", "confidence": 1.0, "tags": ["owasp", "eval_used"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "yade-mcp-bridge/src/yade_mcp_bridge/execution/script.py"}, "region": {"startLine": 76}}}]}, {"ruleId": "scanner-4e3e278c8b8b6c47", "level": "error", "message": {"text": "Insecure pattern 'exec_used' in yade-mcp-bridge/src/yade_mcp_bridge/execution/script.py:79"}, "properties": {"repobilityId": "37c7fc963da598eb", "scanner": "scanner-primary", "fingerprint": "4e3e278c8b8b6c47", "layer": "security", "severity": "high", "confidence": 1.0, "tags": ["owasp", "exec_used"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "yade-mcp-bridge/src/yade_mcp_bridge/execution/script.py"}, "region": {"startLine": 79}}}]}, {"ruleId": "scanner-c41424719f66cb5a", "level": "error", "message": {"text": "Insecure pattern 'eval_used' in yade-mcp-bridge/src/yade_mcp_bridge/handlers/execute_code.py:311"}, "properties": {"repobilityId": "064f05b47f489520", "scanner": "scanner-primary", "fingerprint": "c41424719f66cb5a", "layer": "security", "severity": "high", "confidence": 1.0, "tags": ["owasp", "eval_used"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "yade-mcp-bridge/src/yade_mcp_bridge/handlers/execute_code.py"}, "region": {"startLine": 311}}}]}, {"ruleId": "scanner-eec3b4bc1a354387", "level": "error", "message": {"text": "Insecure pattern 'exec_used' in yade-mcp-bridge/src/yade_mcp_bridge/handlers/execute_code.py:314"}, "properties": {"repobilityId": "fcf70d1b305bac9c", "scanner": "scanner-primary", "fingerprint": "eec3b4bc1a354387", "layer": "security", "severity": "high", "confidence": 1.0, "tags": ["owasp", "exec_used"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "yade-mcp-bridge/src/yade_mcp_bridge/handlers/execute_code.py"}, "region": {"startLine": 314}}}]}, {"ruleId": "scanner-2f90a0847f8f1fcc", "level": "warning", "message": {"text": "GitHub Actions workflow grants broad write permissions"}, "properties": {"repobilityId": "b61be44e5a0f7e27", "scanner": "scanner-primary", "fingerprint": "2f90a0847f8f1fcc", "layer": "cicd", "severity": "medium", "confidence": 1.0, "tags": ["supply-chain", "github-actions", "least-privilege"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": ".github/workflows/release-bridge.yml"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-1838a141491ce38c", "level": "warning", "message": {"text": "GitHub Actions workflow grants broad write permissions"}, "properties": {"repobilityId": "b8fd4f5048f96576", "scanner": "scanner-primary", "fingerprint": "1838a141491ce38c", "layer": "cicd", "severity": "medium", "confidence": 1.0, "tags": ["supply-chain", "github-actions", "least-privilege"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": ".github/workflows/release.yml"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-3ab5d313dda8e5f9", "level": "note", "message": {"text": "Debug logging residue appears in source files"}, "properties": {"repobilityId": "19a3a6271ce4ab22", "scanner": "scanner-primary", "fingerprint": "3ab5d313dda8e5f9", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["debug", "cleanup", "repo-hardening", "generated-repo-pattern"]}}, {"ruleId": "scanner-ea8f3013f588db25", "level": "note", "message": {"text": "Shallow git history limits provenance confidence"}, "properties": {"repobilityId": "ca375b998102aaf4", "scanner": "scanner-primary", "fingerprint": "ea8f3013f588db25", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["provenance", "git-history", "generated-repo-pattern"]}}, {"ruleId": "scanner-8424db9c75e04ba4", "level": "none", "message": {"text": "Very short observed git history"}, "properties": {"repobilityId": "82c1f68d4d8d3cf1", "scanner": "scanner-primary", "fingerprint": "8424db9c75e04ba4", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["provenance", "git-history", "generated-repo-pattern"]}}, {"ruleId": "scanner-e725d2ab884fbd49", "level": "note", "message": {"text": "Multiple root agent instruction files without precedence"}, "properties": {"repobilityId": "1953db6c89508d22", "scanner": "scanner-primary", "fingerprint": "e725d2ab884fbd49", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["agent-instructions", "governance"]}}, {"ruleId": "scanner-f72eb8dd5a2a43a1", "level": "note", "message": {"text": "Legacy-named symbol `test_build_returns_copy` in tests/bridge/test_utils.py:88"}, "properties": {"repobilityId": "fc819f2aca5065f4", "scanner": "scanner-primary", "fingerprint": "f72eb8dd5a2a43a1", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "legacy-marker", "dead-code"]}}, {"ruleId": "scanner-8d0d4a9cf4c96ea3", "level": "none", "message": {"text": "Commented-code block (5 lines) in tests/bridge/test_protocol.py:484"}, "properties": {"repobilityId": "4f905a03c232bfed", "scanner": "scanner-primary", "fingerprint": "8d0d4a9cf4c96ea3", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["integrity", "commented-code", "dead-code"]}}, {"ruleId": "scanner-39223ca4bf775924", "level": "none", "message": {"text": "Commented-code block (6 lines) in showcase/triaxial/triaxial_drained_shear.py:43"}, "properties": {"repobilityId": "083a502ec6d1f556", "scanner": "scanner-primary", "fingerprint": "39223ca4bf775924", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["integrity", "commented-code", "dead-code"]}}, {"ruleId": "scanner-5a415bebd95a4d3d", "level": "none", "message": {"text": "Commented-code block (5 lines) in scripts/refresh_api_docs.py:92"}, "properties": {"repobilityId": "436624a59d4b3cd5", "scanner": "scanner-primary", "fingerprint": "5a415bebd95a4d3d", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["integrity", "commented-code", "dead-code"]}}, {"ruleId": "scanner-caec5fa150f1004a", "level": "warning", "message": {"text": "Network/subprocess call without timeout or try/except \u2014 scripts/restructure_docs.py:169"}, "properties": {"repobilityId": "ba0ca95bfe1f9086", "scanner": "scanner-primary", "fingerprint": "caec5fa150f1004a", "layer": "quality", "severity": "medium", "confidence": 1.0, "tags": ["integrity", "fragile-runtime", "robustness"]}}, {"ruleId": "scanner-ae6c82a958a4de08", "level": "none", "message": {"text": "Commented-code block (6 lines) in yade-mcp-bridge/src/yade_mcp_bridge/utils/response.py:21"}, "properties": {"repobilityId": "f257e7f919371c1f", "scanner": "scanner-primary", "fingerprint": "ae6c82a958a4de08", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["integrity", "commented-code", "dead-code"]}}, {"ruleId": "scanner-0f8f7e12855eaf14", "level": "none", "message": {"text": "Commented-code block (5 lines) in yade-mcp-bridge/src/yade_mcp_bridge/execution/script.py:82"}, "properties": {"repobilityId": "e5b18ba105a9bb9c", "scanner": "scanner-primary", "fingerprint": "0f8f7e12855eaf14", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["integrity", "commented-code", "dead-code"]}}, {"ruleId": "scanner-5b9f0aec7adf46c9", "level": "none", "message": {"text": "Commented-code block (5 lines) in yade-mcp-bridge/src/yade_mcp_bridge/runtime/pyrunner.py:15"}, "properties": {"repobilityId": "de15f9db75ef247f", "scanner": "scanner-primary", "fingerprint": "5b9f0aec7adf46c9", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["integrity", "commented-code", "dead-code"]}}, {"ruleId": "scanner-908a380e1bb9c496", "level": "none", "message": {"text": "Commented-code block (6 lines) in yade-mcp-bridge/src/yade_mcp_bridge/runtime/signals.py:18"}, "properties": {"repobilityId": "362631e739bc5e18", "scanner": "scanner-primary", "fingerprint": "908a380e1bb9c496", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["integrity", "commented-code", "dead-code"]}}, {"ruleId": "scanner-c478c45e12fec7a0", "level": "none", "message": {"text": "Commented-code block (5 lines) in yade-mcp-bridge/src/yade_mcp_bridge/handlers/execute_code.py:35"}, "properties": {"repobilityId": "3e851730d2d0d2d8", "scanner": "scanner-primary", "fingerprint": "c478c45e12fec7a0", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["integrity", "commented-code", "dead-code"]}}, {"ruleId": "scanner-2f8249d68e3d9036", "level": "none", "message": {"text": "Commented-code block (5 lines) in yade-mcp-bridge/src/yade_mcp_bridge/handlers/tasks.py:161"}, "properties": {"repobilityId": "23802df12991478e", "scanner": "scanner-primary", "fingerprint": "2f8249d68e3d9036", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["integrity", "commented-code", "dead-code"]}}, {"ruleId": "scanner-4c0db579339bb6e0", "level": "none", "message": {"text": "Commented-code block (5 lines) in src/yade_mcp/contracts.py:17"}, "properties": {"repobilityId": "f28b1564bd316803", "scanner": "scanner-primary", "fingerprint": "4c0db579339bb6e0", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["integrity", "commented-code", "dead-code"]}}, {"ruleId": "scanner-bb150826bb295b05", "level": "none", "message": {"text": "Commented-code block (6 lines) in src/yade_mcp/tools/check_task_status.py:122"}, "properties": {"repobilityId": "d010e0f9edde0228", "scanner": "scanner-primary", "fingerprint": "bb150826bb295b05", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["integrity", "commented-code", "dead-code"]}}, {"ruleId": "scanner-2c04133e54348533", "level": "note", "message": {"text": "Near-duplicate function bodies in 2 places"}, "properties": {"repobilityId": "91f77f452353e11d", "scanner": "scanner-primary", "fingerprint": "2c04133e54348533", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "duplicate", "dry"]}}, {"ruleId": "scanner-2c04133e54348533", "level": "note", "message": {"text": "Near-duplicate function bodies in 2 places"}, "properties": {"repobilityId": "29441b9f62e1a949", "scanner": "scanner-primary", "fingerprint": "2c04133e54348533", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "duplicate", "dry"]}}, {"ruleId": "scanner-2c04133e54348533", "level": "note", "message": {"text": "Near-duplicate function bodies in 2 places"}, "properties": {"repobilityId": "5b2a6ec4968b6415", "scanner": "scanner-primary", "fingerprint": "2c04133e54348533", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "duplicate", "dry"]}}, {"ruleId": "scanner-2c04133e54348533", "level": "note", "message": {"text": "Near-duplicate function bodies in 2 places"}, "properties": {"repobilityId": "05b589dffd068e66", "scanner": "scanner-primary", "fingerprint": "2c04133e54348533", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "duplicate", "dry"]}}]}]}