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Generated repositories often omit licensing, which blocks reuse and automated intake."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "low", "confidence": 1.0}}, {"id": "scanner-3ab5d313dda8e5f9", "name": "Debug logging residue appears in source files", "shortDescription": {"text": "Debug logging residue appears in source files"}, "fullDescription": {"text": "Found 208 console/debugger/print-style debug statements in non-test source. This is a common fast-generation residue before production cleanup."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "low", "confidence": 1.0}}, {"id": "scanner-b9088664ace7f748", "name": "Composite production-readiness gap", "shortDescription": {"text": "Composite production-readiness gap"}, "fullDescription": {"text": "Multiple low-cost hardening controls are missing together: license, ci. 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This is not a failure by itself, but it lowers confidence in evolution-based diagnosis."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-f771c9cd6484bf61", "name": "Network/subprocess call without timeout or try/except \u2014 hpc/run_queue_local.py:34", "shortDescription": {"text": "Network/subprocess call without timeout or try/except \u2014 hpc/run_queue_local.py:34"}, "fullDescription": {"text": "`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). 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"3476c88fa988c3da", "scanner": "scanner-primary", "fingerprint": "f7c5febc47d33f41", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "src/defect_analysis.py:90"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-cc173c0941cf052f", "level": "note", "message": {"text": "Possibly dead Python function: pore_radius"}, "properties": {"repobilityId": "1c0a89ae8757b644", "scanner": "scanner-primary", "fingerprint": "cc173c0941cf052f", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "src/defect_analysis.py:104"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-9125a7746f440f6e", "level": "note", "message": {"text": "Possibly dead Python function: init_bicrystal"}, "properties": {"repobilityId": "29cd5d3f552b883b", "scanner": "scanner-primary", "fingerprint": "9125a7746f440f6e", "layer": 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"scanner-primary", "fingerprint": "4601e3ad3bb28677", "layer": "cicd", "severity": "medium", "confidence": 1.0, "tags": ["coverage"]}}, {"ruleId": "scanner-ea3b5e389d8c9c0f", "level": "note", "message": {"text": "Low test-to-source ratio"}, "properties": {"repobilityId": "ef7b2552cc00a375", "scanner": "scanner-primary", "fingerprint": "ea3b5e389d8c9c0f", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["tests"]}}, {"ruleId": "scanner-141b30a41e03817b", "level": "note", "message": {"text": "No license file detected"}, "properties": {"repobilityId": "982fac9e59fa508f", "scanner": "scanner-primary", "fingerprint": "141b30a41e03817b", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["license", "repo-hardening", "generated-repo-pattern"]}}, {"ruleId": "scanner-3ab5d313dda8e5f9", "level": "note", "message": {"text": "Debug logging residue appears in source files"}, "properties": {"repobilityId": "1b9554418b2c6ad8", "scanner": "scanner-primary", "fingerprint": "3ab5d313dda8e5f9", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["debug", "cleanup", "repo-hardening", "generated-repo-pattern"]}}, {"ruleId": "scanner-b9088664ace7f748", "level": "note", "message": {"text": "Composite production-readiness gap"}, "properties": {"repobilityId": "34208ccb99fec612", "scanner": "scanner-primary", "fingerprint": "b9088664ace7f748", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["production-readiness", "repo-hardening", "generated-repo-pattern"]}}, {"ruleId": "scanner-ea8f3013f588db25", "level": "note", "message": {"text": "Shallow git history limits provenance confidence"}, "properties": {"repobilityId": "2cd447a1a41b8891", "scanner": "scanner-primary", "fingerprint": "ea8f3013f588db25", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["provenance", "git-history", "generated-repo-pattern"]}}, {"ruleId": "scanner-8424db9c75e04ba4", "level": "none", "message": {"text": "Very short observed git history"}, "properties": {"repobilityId": "666ebdcefaf2ef2a", "scanner": "scanner-primary", "fingerprint": "8424db9c75e04ba4", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["provenance", "git-history", "generated-repo-pattern"]}}, {"ruleId": "scanner-f771c9cd6484bf61", "level": "warning", "message": {"text": "Network/subprocess call without timeout or try/except \u2014 hpc/run_queue_local.py:34"}, "properties": {"repobilityId": "112b38861e07f3e9", "scanner": "scanner-primary", "fingerprint": "f771c9cd6484bf61", "layer": "quality", "severity": "medium", "confidence": 1.0, "tags": ["integrity", "fragile-runtime", "robustness"]}}, {"ruleId": "scanner-e10e4126e506b58e", "level": "none", "message": {"text": "Commented-code block (6 lines) in src/dislocation_mobility.py:36"}, "properties": {"repobilityId": "3dade8cb981d1e3b", "scanner": "scanner-primary", "fingerprint": "e10e4126e506b58e", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["integrity", "commented-code", "dead-code"]}}, {"ruleId": "scanner-7bd50073f7210e2f", "level": "note", "message": {"text": "Legacy-named symbol `b4_pore_v2` in src/analyze_iter7.py:41"}, "properties": {"repobilityId": "90db0201f42d8dd3", "scanner": "scanner-primary", "fingerprint": "7bd50073f7210e2f", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "legacy-marker", "dead-code"]}}, {"ruleId": "scanner-6db8fd988eb10df3", "level": "none", "message": {"text": "Commented-code block (6 lines) in src/defect_analysis_3d.py:75"}, "properties": {"repobilityId": "f9f85118723487ef", "scanner": "scanner-primary", "fingerprint": "6db8fd988eb10df3", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["integrity", "commented-code", "dead-code"]}}, {"ruleId": "scanner-c2da69f875d80cef", "level": "note", "message": {"text": "Legacy-named symbol `matrix_v2` in src/analyze_matrix_v2.py:3"}, "properties": {"repobilityId": "3c2cbf690765baaa", "scanner": "scanner-primary", "fingerprint": "c2da69f875d80cef", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "legacy-marker", "dead-code"]}}, {"ruleId": "scanner-6a87533bb85133f0", "level": "note", "message": {"text": "Legacy-named symbol `b4_pore_v2` in src/run_b4_b5.py:37"}, "properties": {"repobilityId": "540d8bf40d45768f", "scanner": "scanner-primary", "fingerprint": "6a87533bb85133f0", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "legacy-marker", "dead-code"]}}, {"ruleId": "scanner-67cba453fbf090ea", "level": "note", "message": {"text": "Legacy-named symbol `b4_pore_v2` in src/defect_analysis.py:108"}, "properties": {"repobilityId": "42a81b59423ab4ee", "scanner": "scanner-primary", "fingerprint": "67cba453fbf090ea", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "legacy-marker", "dead-code"]}}, {"ruleId": "scanner-c556ee8a6552ae47", "level": "none", "message": {"text": "Commented-code block (5 lines) in src/run_forest_3d.py:38"}, "properties": {"repobilityId": "404c6b497de3ce9f", "scanner": "scanner-primary", "fingerprint": "c556ee8a6552ae47", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["integrity", "commented-code", "dead-code"]}}, {"ruleId": "scanner-5cb24cb53248fbbf", "level": "none", "message": {"text": "Commented-code block (5 lines) in src/pfc2d.py:102"}, "properties": {"repobilityId": "fdf7b82bc20a5c74", "scanner": "scanner-primary", "fingerprint": "5cb24cb53248fbbf", "layer": "quality", "severity": "info", "confidence": 1.0, "tags": ["integrity", "commented-code", "dead-code"]}}, {"ruleId": "scanner-2c04133e54348533", "level": "note", "message": {"text": "Near-duplicate function bodies in 2 places"}, "properties": {"repobilityId": "b179b6f297ac0513", "scanner": "scanner-primary", "fingerprint": "2c04133e54348533", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "duplicate", "dry"]}}, {"ruleId": 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"duplicate", "dry"]}}, {"ruleId": "scanner-2c04133e54348533", "level": "note", "message": {"text": "Near-duplicate function bodies in 2 places"}, "properties": {"repobilityId": "3163dad2f764c64f", "scanner": "scanner-primary", "fingerprint": "2c04133e54348533", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "duplicate", "dry"]}}, {"ruleId": "scanner-2c04133e54348533", "level": "note", "message": {"text": "Near-duplicate function bodies in 2 places"}, "properties": {"repobilityId": "acab79202a070ca7", "scanner": "scanner-primary", "fingerprint": "2c04133e54348533", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "duplicate", "dry"]}}, {"ruleId": "scanner-2c04133e54348533", "level": "note", "message": {"text": "Near-duplicate function bodies in 2 places"}, "properties": {"repobilityId": "fa8ed628dadf4cfa", "scanner": "scanner-primary", "fingerprint": "2c04133e54348533", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "duplicate", "dry"]}}, {"ruleId": "scanner-2c04133e54348533", "level": "note", "message": {"text": "Near-duplicate function bodies in 2 places"}, "properties": {"repobilityId": "139bcf44ac9f7ce9", "scanner": "scanner-primary", "fingerprint": "2c04133e54348533", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "duplicate", "dry"]}}, {"ruleId": "scanner-2c04133e54348533", "level": "note", "message": {"text": "Near-duplicate function bodies in 2 places"}, "properties": {"repobilityId": "9a7290263e5a4c6b", "scanner": "scanner-primary", "fingerprint": "2c04133e54348533", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "duplicate", "dry"]}}, {"ruleId": "scanner-2c04133e54348533", "level": "note", "message": {"text": "Near-duplicate function bodies in 2 places"}, "properties": {"repobilityId": "c2742bde21114fd9", "scanner": "scanner-primary", "fingerprint": "2c04133e54348533", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "duplicate", "dry"]}}, {"ruleId": "scanner-2c04133e54348533", "level": "note", "message": {"text": "Near-duplicate function bodies in 2 places"}, "properties": {"repobilityId": "352427dbaf6e8767", "scanner": "scanner-primary", "fingerprint": "2c04133e54348533", "layer": "quality", "severity": "low", "confidence": 1.0, "tags": ["integrity", "duplicate", "dry"]}}]}]}