{"version": "2.1.0", "$schema": "https://json.schemastore.org/sarif-2.1.0.json", "runs": [{"tool": {"driver": {"name": "Repobility", "informationUri": "https://repobility.com", "rules": [{"id": "scanner-e7d397d47e6c8b13", "name": "Possibly dead Python function: two_gaussians", "shortDescription": {"text": "Possibly dead Python function: two_gaussians"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-bff2bf8efaee7155", "name": "Possibly dead Python function: fit_dg", "shortDescription": {"text": "Possibly dead Python function: fit_dg"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-4a06ec719529a9d6", "name": "Possibly dead Python function: band_ratio", "shortDescription": {"text": "Possibly dead Python function: band_ratio"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-bae7d4894643977c", "name": "Possibly dead Python function: lorentzian", "shortDescription": {"text": "Possibly dead Python function: lorentzian"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-824e19db52230689", "name": "Possibly dead Python function: ig", "shortDescription": {"text": "Possibly dead Python function: ig"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-3fcbdd9645047e79", "name": "Possibly dead Python function: integrand", "shortDescription": {"text": "Possibly dead Python function: integrand"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-d4a18e819e8fa258", "name": "Possibly dead Python function: F", "shortDescription": {"text": "Possibly dead Python function: F"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-fef2b990d6dbae4e", "name": "Possibly dead Python function: quadratic_func", "shortDescription": {"text": "Possibly dead Python function: quadratic_func"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-5b4911953b1aed59", "name": "Possibly dead Python function: derivs", "shortDescription": {"text": "Possibly dead Python function: derivs"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-aab1ac10d609947a", "name": "Possibly dead Python function: mean_and_stderr", "shortDescription": {"text": "Possibly dead Python function: mean_and_stderr"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-b73e31a5f554630d", "name": "Possibly dead Python function: eigenvalue_spectrum", "shortDescription": {"text": "Possibly dead Python function: eigenvalue_spectrum"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-30be33c53222af63", "name": "Possibly dead Python function: make_xor", "shortDescription": {"text": "Possibly dead Python function: make_xor"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-b990cd12c242b95a", "name": "Possibly dead Python function: make_checkerboard", "shortDescription": {"text": "Possibly dead Python function: make_checkerboard"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-4f1487d0dc17c04a", "name": "Possibly dead Python function: wham_simple", "shortDescription": {"text": "Possibly dead Python function: wham_simple"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-38db7012b0496c3a", "name": "Possibly dead Python function: radius_of_gyration", "shortDescription": {"text": "Possibly dead Python function: radius_of_gyration"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-cb1dcf0729db1b89", "name": "Possibly dead Python function: save_all", "shortDescription": {"text": "Possibly dead Python function: save_all"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-04c44d077588399a", "name": "Possibly dead Python function: decode_your_1010s_grade", "shortDescription": {"text": "Possibly dead Python function: decode_your_1010s_grade"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-4998e5696505f016", "name": "Possibly dead Python function: drawer_load", "shortDescription": {"text": "Possibly dead Python function: drawer_load"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-f89c0fc856e4c454", "name": "Possibly dead Python function: construct", "shortDescription": {"text": "Possibly dead Python function: construct"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-a4c0a462c000487c", "name": "Possibly dead Python function: add_noise", "shortDescription": {"text": "Possibly dead Python function: add_noise"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-8e9c613312f27179", "name": "Possibly dead Python function: collect_peaks_and_errors", "shortDescription": {"text": "Possibly dead Python function: collect_peaks_and_errors"}, "fullDescription": {"text": "No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler."}, "properties": {"scanner": "scanner-primary", "layer": "software", "severity": "low", "confidence": 1.0}}, {"id": "scanner-f0d5e998a795b20e", "name": "Docker base image is tag-pinned but not digest-pinned: julia:1.11-bookworm", "shortDescription": {"text": "Docker base image is tag-pinned but not digest-pinned: julia:1.11-bookworm"}, "fullDescription": {"text": "Container tags can be retagged upstream. Pin production base images to a reviewed digest (`image@sha256:...`) when reproducibility and supply-chain integrity matter."}, "properties": {"scanner": "scanner-primary", "layer": "hardware", "severity": "low", "confidence": 1.0}}, {"id": "scanner-aa5acaa49eb8315b", "name": "Containers defined but no K8s/orchestration manifest found", "shortDescription": {"text": "Containers defined but no K8s/orchestration manifest found"}, "fullDescription": {"text": "Repo has Dockerfiles/compose but no Kubernetes/Nomad manifests. If the target deployment is K8s, the manifests may live in a separate ops repo."}, "properties": {"scanner": "scanner-primary", "layer": "hardware", "severity": "low", "confidence": 1.0}}, {"id": "scanner-9710c8d059e53154", "name": "No frontend routes/components detected", "shortDescription": {"text": "No frontend routes/components detected"}, "fullDescription": {"text": "No React/Vue/Next routes were found. This is fine for backend-only repos."}, "properties": {"scanner": "scanner-primary", "layer": "frontend", "severity": "info", "confidence": 1.0}}, {"id": "scanner-9d13e74358e90e9d", "name": "Runtime dotenv file present in repo: py/.env", "shortDescription": {"text": "Runtime dotenv file present in repo: py/.env"}, "fullDescription": {"text": "`py/.env` looks like a runtime dotenv file. No high-confidence secret value was matched, but runtime dotenv files often drift into live credentials. Move real values to a secret manager and keep only `.env.example` style templates in source control."}, "properties": {"scanner": "scanner-primary", "layer": "security", "severity": "high", "confidence": 1.0}}, {"id": "scanner-6372cebde0220094", "name": "No auth library detected", "shortDescription": {"text": "No auth library detected"}, "fullDescription": {"text": "The scanner did not find any standard auth library (JWT, OAuth, NextAuth, Auth0, etc.). The repo has auth/admin/session surface indicators, so auth may live in custom code, in a separate service, or be missing."}, "properties": {"scanner": "scanner-primary", "layer": "security", "severity": "medium", "confidence": 1.0}}, {"id": "scanner-28c4a04bd807da0c", "name": "GitHub Action is tag-pinned rather than SHA-pinned", "shortDescription": {"text": "GitHub Action is tag-pinned rather than SHA-pinned"}, "fullDescription": {"text": "actions/checkout@v4 can move without a code change in this repo. Pin third-party actions to a reviewed 40-character commit SHA."}, "properties": {"scanner": "scanner-primary", "layer": "cicd", "severity": "low", "confidence": 1.0}}, {"id": "scanner-ad6701f0a8405e22", "name": "GitHub Actions workflow grants broad write permissions", "shortDescription": {"text": "GitHub Actions workflow grants broad write permissions"}, "fullDescription": {"text": "CI tokens with write permissions increase blast radius when an action, dependency, or PR workflow is compromised. Prefer job-level least-privilege permissions."}, "properties": {"scanner": "scanner-primary", "layer": "cicd", "severity": "medium", "confidence": 1.0}}, {"id": "scanner-ad0e240acc0ae024", "name": "Very large file: py/coursework/missions/m3_images.py (7335 lines)", "shortDescription": {"text": "Very large file: py/coursework/missions/m3_images.py (7335 lines)"}, "fullDescription": {"text": "Files with >800 lines often hide complexity hotspots and discourage tests."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "low", "confidence": 1.0}}, {"id": "scanner-6893a6c8b0861585", "name": "Very low test-to-source ratio", "shortDescription": {"text": "Very low test-to-source ratio"}, "fullDescription": {"text": "0 test file(s) for 79 source file(s) (ratio 0.00). Consider adding integration or unit tests for critical paths."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "medium", "confidence": 1.0}}, {"id": "scanner-3ab5d313dda8e5f9", "name": "Debug logging residue appears in source files", "shortDescription": {"text": "Debug logging residue appears in source files"}, "fullDescription": {"text": "Found 586 console/debugger/print-style debug statements in non-test source. This is a common fast-generation residue before production cleanup."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "low", "confidence": 1.0}}, {"id": "scanner-11825279136b53a3", "name": "CI is configured but no tests are detected", "shortDescription": {"text": "CI is configured but no tests are detected"}, "fullDescription": {"text": "A CI pipeline exists, but the scan found no test files to gate. Opus labeled this generated-code pattern as config theater: release machinery exists, but it has little behavioral signal."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "medium", "confidence": 1.0}}, {"id": "scanner-ea8f3013f588db25", "name": "Shallow git history limits provenance confidence", "shortDescription": {"text": "Shallow git history limits provenance confidence"}, "fullDescription": {"text": "The repository is a shallow clone. Origin/evolution analysis cannot distinguish fresh generation, imported legacy code, or long-lived human code with high confidence."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "low", "confidence": 1.0}}, {"id": "scanner-8424db9c75e04ba4", "name": "Very short observed git history", "shortDescription": {"text": "Very short observed git history"}, "fullDescription": {"text": "The repo has multiple source files but two or fewer visible commits. This is not a failure by itself, but it lowers confidence in evolution-based diagnosis."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-c035e9f1940e2e10", "name": "Commented-code block (5 lines) in manuscripts/typst/magnetic_moment/scripts/mm_star_corrected.py:56", "shortDescription": {"text": "Commented-code block (5 lines) in manuscripts/typst/magnetic_moment/scripts/mm_star_corrected.py:56"}, "fullDescription": {"text": "A long run of `//` or `#` lines usually means abandoned code. Delete or move to git history. Keeps the canvas + dead-code detection honest."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-c9f02a91efb70800", "name": "Commented-code block (5 lines) in manuscripts/typst/xrd/scripts/xrd_final_corrected.py:322", "shortDescription": {"text": "Commented-code block (5 lines) in manuscripts/typst/xrd/scripts/xrd_final_corrected.py:322"}, "fullDescription": {"text": "A long run of `//` or `#` lines usually means abandoned code. Delete or move to git history. Keeps the canvas + dead-code detection honest."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-225d46ef1405b209", "name": "Legacy-named symbol `tag_v2` in manuscripts/typst/bio-microscopy/scripts/process_images.py:73", "shortDescription": {"text": "Legacy-named symbol `tag_v2` in manuscripts/typst/bio-microscopy/scripts/process_images.py:73"}, "fullDescription": {"text": "Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "low", "confidence": 1.0}}, {"id": "scanner-9eb4958fd66d7bdb", "name": "Commented-code block (12 lines) in manuscripts/typst/pc3236/scripts/quadruple_pendulum.py:126", "shortDescription": {"text": "Commented-code block (12 lines) in manuscripts/typst/pc3236/scripts/quadruple_pendulum.py:126"}, "fullDescription": {"text": "A long run of `//` or `#` lines usually means abandoned code. Delete or move to git history. Keeps the canvas + dead-code detection honest."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "info", "confidence": 1.0}}, {"id": "scanner-5894db152f8014ee", "name": "Legacy-named symbol `E_old` in py/protein_landscape/monte_carlo.py:23", "shortDescription": {"text": "Legacy-named symbol `E_old` in py/protein_landscape/monte_carlo.py:23"}, "fullDescription": {"text": "Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "low", "confidence": 1.0}}, {"id": "scanner-2c04133e54348533", "name": "Near-duplicate function bodies in 2 places", "shortDescription": {"text": "Near-duplicate function bodies in 2 places"}, "fullDescription": {"text": "Functions with the same first-5-line body hash:\nmanuscripts/typst/raman/scripts/analyze_raman.py:read_spectrum, manuscripts/typst/raman/scripts/quantitative_analysis.py:read_spectrum\n\nThis is *the* AI-coder failure mode (4\u00d7 more duplication in vibe-coded repos \u2014 see https://jw.hn/ai-code-hygiene). Consolidate or document why they're separate."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "low", "confidence": 1.0}}, {"id": "scanner-be46ea126aa5d8dc", "name": "Near-duplicate function bodies in 3 places", "shortDescription": {"text": "Near-duplicate function bodies in 3 places"}, "fullDescription": {"text": "Functions with the same first-5-line body hash:\nmanuscripts/typst/magnetic_moment/scripts/mm_enhanced_analysis.py:to_float, manuscripts/typst/magnetic_moment/scripts/mm_analysis.py:to_float, manuscripts/typst/magnetic_moment/scripts/mm_corrected_analysis.py:to_float\n\nThis is *the* AI-coder failure mode (4\u00d7 more duplication in vibe-coded repos \u2014 see https://jw.hn/ai-code-hygiene). Consolidate or document why they're separate."}, "properties": {"scanner": "scanner-primary", "layer": "quality", "severity": "low", "confidence": 1.0}}]}}, "automationDetails": {"id": "repobility/22337"}, "properties": {"repository": "Vis-42/Vis-42.github.io", "repoUrl": "https://github.com/Vis-42/Vis-42.github.io", "branch": "main"}, "results": [{"ruleId": "scanner-e7d397d47e6c8b13", "level": "note", "message": {"text": "Possibly dead Python function: two_gaussians"}, "properties": {"repobilityId": "3178560b6b6d323c", "scanner": "scanner-primary", "fingerprint": "e7d397d47e6c8b13", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "manuscripts/typst/raman/scripts/analyze_dlc.py:163"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-bff2bf8efaee7155", "level": "note", "message": {"text": "Possibly dead Python function: fit_dg"}, "properties": {"repobilityId": "efe164526ab4b419", "scanner": "scanner-primary", "fingerprint": "bff2bf8efaee7155", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "manuscripts/typst/raman/scripts/analyze_dlc.py:167"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-4a06ec719529a9d6", "level": "note", "message": {"text": "Possibly dead Python function: band_ratio"}, "properties": {"repobilityId": "4b0ae834fc386f87", "scanner": "scanner-primary", "fingerprint": "4a06ec719529a9d6", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "manuscripts/typst/raman/scripts/analyze_raman.py:130"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-bae7d4894643977c", "level": "note", "message": {"text": "Possibly dead Python function: lorentzian"}, "properties": {"repobilityId": "9fafc09763bd4bc8", "scanner": "scanner-primary", "fingerprint": "bae7d4894643977c", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "manuscripts/typst/raman/scripts/quantitative_analysis.py:36"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-824e19db52230689", "level": "note", "message": {"text": "Possibly dead Python function: ig"}, "properties": {"repobilityId": "ee9885d2aa17d09a", "scanner": "scanner-primary", "fingerprint": "824e19db52230689", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "manuscripts/typst/assignments/scripts/verify_therm11.py:153"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-3fcbdd9645047e79", "level": "note", "message": {"text": "Possibly dead Python function: integrand"}, "properties": {"repobilityId": "f16c8d5ca6578f35", "scanner": "scanner-primary", "fingerprint": "3fcbdd9645047e79", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "manuscripts/typst/assignments/scripts/plot_therm11_bec.py:21"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-d4a18e819e8fa258", "level": "note", "message": {"text": "Possibly dead Python function: F"}, "properties": {"repobilityId": "390ebeaeb266df84", "scanner": "scanner-primary", "fingerprint": "d4a18e819e8fa258", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "manuscripts/typst/assignments/scripts/plot_therm11_bec.py:39"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-fef2b990d6dbae4e", "level": "note", "message": {"text": "Possibly dead Python function: quadratic_func"}, "properties": {"repobilityId": "e24bb504bb9265db", "scanner": "scanner-primary", "fingerprint": "fef2b990d6dbae4e", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "manuscripts/typst/hall_effect/scripts/hall_effect_analysis.py:133"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-5b4911953b1aed59", "level": "note", "message": {"text": "Possibly dead Python function: derivs"}, "properties": {"repobilityId": "35a4d8f958dfb870", "scanner": "scanner-primary", "fingerprint": "5b4911953b1aed59", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, "locations": [{"physicalLocation": {"artifactLocation": {"uri": "manuscripts/typst/pc3236/scripts/quadruple_pendulum.py:120"}, "region": {"startLine": 1}}}]}, {"ruleId": "scanner-aab1ac10d609947a", "level": "note", "message": {"text": "Possibly dead Python function: mean_and_stderr"}, "properties": {"repobilityId": "2b4b11d6d55ef6c0", "scanner": "scanner-primary", "fingerprint": "aab1ac10d609947a", "layer": "software", "severity": "low", "confidence": 1.0, "tags": ["dead-code"]}, 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