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tommasodesanto/Fertility_Spring26

https://github.com/tommasodesanto/Fertility_Spring26 · scanned 2026-06-16 00:40 UTC (2 months, 1 week ago)

95 raw signals (0 security + 95 graph)

UNIFIED Repobility · multi-layer engine · AI coders

Complete repo analysis

Last scanned 2 months, 1 week ago · v1 · 80 actionable findings from 1 signal source. 15 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

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Scan summary Repository scanned at 69.9/100 with 66.7% coverage. It contains 1427 nodes across 0 cross-layer flows, written primarily in mixed languages. Engine surfaced 95 findings — concentrated in quality (60), software (22), network (9). Risk profile is low: 0 critical, 0 high, 20 medium. Recommended next step: open the quality layer findings first — that's where the highest-impact wins live.

Showing 69 of 80 actionable findings. 95 raw detector signals were grouped into reader-sized issues. Click TP / FP to vote on a finding's accuracy — votes adjust the confidence weighting and improve detection across the platform.

medium System graph quality Agent instructions conf 1.00 Agent authority lacks a verifier contract: ops/nightly-memory/SKILL.md
This agent instruction grants code or shell authority but does not state the verification gate that decides promotion. The recurring safe pattern is: LLM proposes; deterministic tests/build/security checks verify; only verified code promotes.
ops/nightly-memory/SKILL.md VerificationSkill file
medium System graph quality Agent instructions conf 1.00 Agent instructions exist but release-hardening basics are missing
AI-coder instruction files were found, but the repo is missing license, ci, tests. Treat this as a contract gap: the agent is guided, but the generated output is not yet guarded by the controls that make it repeatable.
Repo hardeningGenerated repo pattern
medium System graph quality Production readiness conf 1.00 Composite production-readiness gap
Multiple low-cost hardening controls are missing together: license, ci, tests. Opus verification showed these co-occurring gaps are a better readiness signal than reading each flag in isolation.
Repo hardeningGenerated repo pattern
medium System graph quality Placeholder conf 1.00 Critical user flow still appears backed by mock or placeholder data
A payment/auth/admin/order/billing-style flow contains mock, fake, TODO, dummy, or placeholder markers in runtime source. In the Fable corpus this is a high-leverage completeness smell: the app can look finished while the money, identity, or tenant flow is still scaffolded.
Mock dataCritical flowGenerated repo pattern
medium System graph security security conf 1.00 Insecure pattern 'direct_innerhtml_assignment' in code/model/tools/tour_widgets.js:73
Found a known-risky pattern (direct_innerhtml_assignment). Review and replace if possible.
code/model/tools/tour_widgets.js:73 Direct innerhtml assignment
medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — code/model/tools/make_direct_fit_slide_note.py:963
`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.
runtime safetyRobustness
medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — code/model/tools/make_full_dispersion_diagnostic_note.py:546
`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.
runtime safetyRobustness
medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — code/model/tools/make_quick_dispersion_snapshot_note.py:327
`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.
runtime safetyRobustness
medium System graph security Coverage conf 1.00 No auth library detected
The scanner did not find any standard auth library (JWT, OAuth, NextAuth, Auth0, etc.). The repo has auth/admin/session surface indicators, so auth may live in custom code, in a separate service, or be missing.
auth
medium System graph cicd CI/CD security conf 1.00 No CI/CD pipelines detected
No GitHub Actions, GitLab CI, or CircleCI configs found. Without CI you can't gate deploys on tests/lints.
CI/CD securityCoverage
medium System graph network Security conf 1.00 Privileged port 10 in use
Port 10 is privileged (<1024). Make sure the service runs with the right caps or front it with a non-privileged port via a load balancer.
code/cluster/submit_intergen_housing_fertility_twohour_panel.sh Ports
medium System graph network Security conf 1.00 Privileged port 2 in use
Port 2 is privileged (<1024). Make sure the service runs with the right caps or front it with a non-privileged port via a load balancer.
code/cluster/submit_intergen_housing_fertility_global_de.sh Ports
medium System graph network Security conf 1.00 Privileged port 23 in use
Port 23 is privileged (<1024). Make sure the service runs with the right caps or front it with a non-privileged port via a load balancer.
ops/git-backup/scripts/install_launchd.sh Ports
medium System graph network Security conf 1.00 Privileged port 3 in use
Port 3 is privileged (<1024). Make sure the service runs with the right caps or front it with a non-privileged port via a load balancer.
code/cluster/submit_intergen_housing_fertility_calibration.sh Ports
medium System graph network Security conf 1.00 Privileged port 40 in use
Port 40 is privileged (<1024). Make sure the service runs with the right caps or front it with a non-privileged port via a load balancer.
ops/git-backup/scripts/install_launchd.sh Ports
medium System graph network Security conf 1.00 Privileged port 42 in use
Port 42 is privileged (<1024). Make sure the service runs with the right caps or front it with a non-privileged port via a load balancer.
code/cluster/pull_intergen_shutdown_snapshots_local.sh Ports
medium System graph network Security conf 1.00 Privileged port 5 in use
Port 5 is privileged (<1024). Make sure the service runs with the right caps or front it with a non-privileged port via a load balancer.
code/cluster/submit_intergen_housing_fertility_global_de.sh Ports
medium System graph network Security conf 1.00 Privileged port 55 in use
Port 55 is privileged (<1024). Make sure the service runs with the right caps or front it with a non-privileged port via a load balancer.
code/cluster/submit_intergen_housing_fertility_calibration.sh Ports
medium System graph network Security conf 1.00 Privileged port 6 in use
Port 6 is privileged (<1024). Make sure the service runs with the right caps or front it with a non-privileged port via a load balancer.
code/cluster/pull_intergen_shutdown_snapshots_local.sh Ports
medium System graph quality Tests conf 1.00 Very low test-to-source ratio
0 test file(s) for 85 source file(s) (ratio 0.00). Consider adding integration or unit tests for critical paths.
Coverage
low System graph quality Debug conf 1.00 Debug logging residue appears in source files
Found 282 console/debugger/print-style debug statements in non-test source. This is a common fast-generation residue before production cleanup.
CleanupRepo hardeningGenerated repo pattern
low System graph quality Agent instructions conf 1.00 Multiple root agent instruction files without precedence
The repo has multiple top-level AI-coder instruction files. Without precedence rules, different agents may follow different policies.
Governance
low System graph quality Integrity conf 1.00 2 occurrences Near-duplicate function bodies in 2 places
Functions with the same first-5-line body hash: code/empirical/build_fertility_slice_diagnosis_report.py:load_inputs, code/empirical/build_distributional_discipline_report.py:make_model_income_profile This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn/…
2 occurrences
repo-level (2 hits)
duplicatesduplication
low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 3 places
Functions with the same first-5-line body hash: code/empirical/build_distributional_discipline_report.py:fmt_num, code/empirical/build_distributional_discipline_report.py:fmt_pct, code/empirical/build_distributional_discipline_report.py:fmt_pp This is *the* AI-coder failure mode (4× more duplicati…
duplicatesduplication
low System graph quality Integrity conf 1.00 14 occurrences Near-duplicate function bodies in 4 places
Functions with the same first-5-line body hash: code/model/intergen_housing_fertility/kernels.py:njit, code/model/dt_cp_model/kernels.py:njit, overnight_variants/2026-05-22_income_mortgage_risk/dt_cp_model/kernels.py:njit, overnight_variants/2026-05-22_developer_missing_middle/dt_cp_model/kernels.p…
14 occurrences
repo-level (14 hits)
duplicatesduplication
low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 5 places
Functions with the same first-5-line body hash: code/model/intergen_housing_fertility/kernels.py:tenure_choice_kernel, code/model/intergen_housing_fertility/kernels.py:tenure_logit_kernel, code/model/dt_cp_model/kernels.py:tenure_choice_kernel, overnight_variants/2026-05-22_income_mortgage_risk/dt_…
duplicatesduplication
low System graph quality Integrity conf 1.00 2 occurrences Near-duplicate function bodies in 8 places
Functions with the same first-5-line body hash: code/model/intergen_housing_fertility/kernels.py:golden_renter_kernel, code/model/intergen_housing_fertility/kernels.py:golden_owner_kernel, code/model/dt_cp_model/kernels.py:golden_renter_kernel, code/model/dt_cp_model/kernels.py:golden_owner_kernel …
2 occurrences
repo-level (2 hits)
duplicatesduplication
low System graph quality License conf 1.00 No license file detected
No LICENSE/COPYING/NOTICE file was found. Generated repositories often omit licensing, which blocks reuse and automated intake.
Repo hardeningGenerated repo pattern
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `compile_empirical_roundup_v1` in code/empirical/roundup/compile_empirical_roundup_v2.py:6
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `d_old` in code/model/intergen_housing_fertility/solver.py:885
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `dpn0_unused` in code/model/dt_cp_model/kernels.py:604
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `dpn0_unused` in code/model/intergen_housing_fertility/kernels.py:612
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `dpn0_unused` in overnight_variants/2026-05-22_developer_missing_middle/dt_cp_model/kernels.py:604
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `dpn0_unused` in overnight_variants/2026-05-22_income_mortgage_risk/dt_cp_model/kernels.py:857
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `empirical_roundup_v1` in code/empirical/roundup/compile_empirical_roundup_v1.py:15
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `income_wealth_fertility_master_v1` in code/empirical/build_distributional_discipline_report.py:53
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `income_wealth_fertility_master_v1` in code/empirical/build_fertility_slice_diagnosis_report.py:49
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `Pi_old` in overnight_variants/2026-05-22_income_mortgage_risk/dt_cp_model/solver.py:2865
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `raw_copy` in ops/nightly-memory/scripts/ingest_local_sessions.py:19
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `results_income_mortgage_risk_v2` in overnight_variants/2026-05-22_income_mortgage_risk/run_income_mortgage_risk_v2_scenarios.py:433
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `run_developer_missing_middle_v2` in overnight_variants/2026-05-22_developer_missing_middle/run_developer_missing_middle_v3_ge.py:28
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `type_market_v2` in overnight_variants/2026-05-22_developer_missing_middle/run_developer_missing_middle_v2.py:304
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph software Dead code conf 1.00 Possibly dead Python function: clone_ns
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/model/intergen_housing_fertility/parameters.py:22
low System graph software Dead code conf 1.00 Possibly dead Python function: clone_ns
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/model/dt_cp_model/parameters.py:22
low System graph software Dead code conf 1.00 Possibly dead Python function: compute_entry_closure_from_value_function
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/model/experiments/population_closure_2026_05_05/entry_closure.py:118
low System graph software Dead code conf 1.00 Possibly dead Python function: deco
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/model/intergen_housing_fertility/kernels.py:22
low System graph software Dead code conf 1.00 Possibly dead Python function: deco
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/model/dt_cp_model/kernels.py:22
low System graph software Dead code conf 1.00 Possibly dead Python function: dict_to_namespace
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/model/intergen_housing_fertility/utils.py:146
low System graph software Dead code conf 1.00 Possibly dead Python function: dict_to_namespace
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/model/dt_cp_model/utils.py:146
low System graph software Dead code conf 1.00 Possibly dead Python function: evaluate_candidate
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
overnight_variants/2026-05-22_income_mortgage_risk/run_v5_nz5_global_search.py:109
low System graph software Dead code conf 1.00 Possibly dead Python function: income_wealth_table
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/empirical/build_distributional_discipline_report.py:640
low System graph software Dead code conf 1.00 Possibly dead Python function: init_panel_worker
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/model/intergen_housing_fertility/local_panel.py:455
low System graph software Dead code conf 1.00 Possibly dead Python function: load_acs_room_bins
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/model/tools/make_direct_fit_slide_note.py:418
low System graph software Dead code conf 1.00 Possibly dead Python function: load_panel_records
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/model/intergen_housing_fertility/local_panel.py:783
low System graph software Dead code conf 1.00 Possibly dead Python function: location_table
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/empirical/build_distributional_discipline_report.py:738
low System graph software Dead code conf 1.00 Possibly dead Python function: make_panel
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/model/tools/plot_lifecycle_compare.py:85
low System graph software Dead code conf 1.00 Possibly dead Python function: mobility_table
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/empirical/build_distributional_discipline_report.py:783
low System graph software Dead code conf 1.00 Possibly dead Python function: model_room_bin_shares
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/model/tools/make_direct_fit_slide_note.py:603
low System graph software Dead code conf 1.00 Possibly dead Python function: origin_share
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/empirical/roundup/compile_empirical_roundup_v1.py:171
low System graph software Dead code conf 1.00 Possibly dead Python function: ranking_targets_without_age
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/model/intergen_housing_fertility/local_panel.py:629
low System graph software Dead code conf 1.00 Possibly dead Python function: rooms_table
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/empirical/build_distributional_discipline_report.py:708
low System graph software Dead code conf 1.00 Possibly dead Python function: tenure_wealth_table
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/empirical/build_distributional_discipline_report.py:680
low System graph software Dead code conf 1.00 Possibly dead Python function: transition_table
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/empirical/build_distributional_discipline_report.py:764
low System graph software Dead code conf 1.00 Possibly dead Python function: validate_theta
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
code/model/dt_cp_model/theta.py:53
low System graph quality Provenance conf 1.00 Shallow git history limits provenance confidence
The repository is a shallow clone. Origin/evolution analysis cannot distinguish fresh generation, imported legacy code, or long-lived human code with high confidence.
Git historyGenerated repo pattern
low System graph quality Complexity conf 1.00 Very large file: code/model/dt_cp_model/solver.py (2788 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: code/model/intergen_housing_fertility/solver.py (4534 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: overnight_variants/2026-05-22_developer_missing_middle/dt_cp_model/solver.py (2868 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: overnight_variants/2026-05-22_income_mortgage_risk/dt_cp_model/solver.py (4295 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
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