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TheAxonLab/hcph-sops

https://github.com/TheAxonLab/hcph-sops · scanned 2026-06-16 00:34 UTC (2 months, 2 weeks ago)

39 raw signals (0 security + 39 graph)

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UNIFIED Repobility · multi-layer engine · AI coders

Complete repo analysis

Last scanned 2 months, 2 weeks ago · v1 · 34 actionable findings from 1 signal source. 5 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

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Combined
85.8
/100
Security checks
86
0 findings
System graph
86
77.8% cov · 34 findings
Critical
0
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Agents
10
0 votes
Crowd
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Severity distribution — click a segment to filter
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Severity: Critical 0 High 0 Medium 7 Low 23 9-Layer: Software Security Quality Integrity Frontend Hardware Data Network Cicd Source: Security checks 0 System graph 34 Crowd 0 Layer: Software 19 Network 1 Frontend 1 Security 2 Cicd 2 Quality 9

All 290 nodes from the latest scan, grouped by kind. Each node is a unit the engine identified (file, function, endpoint, table…). Most users won't need this view — it's primarily for debugging the engine's graph extraction or for AI agents that want to enumerate the project structure.

LabelLayerStatusPath
define_env software dead main.py:26
now software healthy main.py:32
plot_timeseries_carpet software dead code/fmri/reports.py:68
plot_timeseries_signal software healthy code/fmri/reports.py:157
plot_interpolation software healthy code/fmri/reports.py:250
visual_report_timeserie software healthy code/fmri/reports.py:297
visual_report_fc software healthy code/fmri/reports.py:358
group_reportlet_censoring software healthy code/fmri/reports.py:400
group_reportlet_fc_dist software healthy code/fmri/reports.py:476
group_reportlet_qc_fc software healthy code/fmri/reports.py:535
compute_distance software healthy code/fmri/reports.py:653
group_reportlet_qc_fc_euclidean software healthy code/fmri/reports.py:683
group_report software healthy code/fmri/reports.py:750
__init__ software healthy code/fmri/nilearn_patcher.py:160
transform_imgs software healthy code/fmri/nilearn_patcher.py:204
transform software dead code/fmri/nilearn_patcher.py:250
get_arguments software healthy code/fmri/funconn.py:71
fit_transform_patched software healthy code/fmri/funconn.py:213
interpolate_and_denoise_timeseries software healthy code/fmri/funconn.py:261
extract_and_denoise_timeseries software healthy code/fmri/funconn.py:352
get_fc_strategy software healthy code/fmri/funconn.py:467
compute_connectivity software healthy code/fmri/funconn.py:499
main software healthy code/fmri/funconn.py:540
get_arguments software healthy code/fmri/funconn_group.py:43
main software healthy code/fmri/funconn_group.py:101
check_and_fix software healthy code/bugfixes/fix_pe_fieldmaps.py:33
edit_meta software healthy code/bugfixes/edit_b0fieldidentifier_fieldmaps.py:33
edit_meta software healthy code/bugfixes/edit_b0fieldsource_data.py:33
separate_by_similar_values software healthy code/data_loader/load_save.py:65
get_func_filenames_bids software healthy code/data_loader/load_save.py:94
get_bids_savename software healthy code/data_loader/load_save.py:181
get_atlas_data software healthy code/data_loader/load_save.py:207
find_atlas_dimension software healthy code/data_loader/load_save.py:257
find_derivative software healthy code/data_loader/load_save.py:291
find_mriqc software healthy code/data_loader/load_save.py:321
reorder_iqms software healthy code/data_loader/load_save.py:352
load_iqms software healthy code/data_loader/load_save.py:380
check_existing_output software healthy code/data_loader/load_save.py:430
load_timeseries software healthy code/data_loader/load_save.py:489
get_confounds_manually software healthy code/data_loader/load_save.py:522
save_output software healthy code/data_loader/load_save.py:558
init_save_layout software dead code/data_loader/load_save.py:583
save_caption software dead code/data_loader/load_save.py:600
load_matrices software dead code/data_loader/load_save.py:618
test_find_derivative software healthy code/data_loader/tests/test_load_save.py:21
test_find_mriqc software healthy code/data_loader/tests/test_load_save.py:35
mock_listdir software healthy code/data_loader/tests/test_load_save.py:38
mock_isdir software healthy code/data_loader/tests/test_load_save.py:41
test_reorder_iqms software healthy code/data_loader/tests/test_load_save.py:51
test_find_atlas_dimension software healthy code/data_loader/tests/test_load_save.py:102

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

LabelLayerStatusPath
.markdownlint.json software healthy .markdownlint.json
mkdocs.yml software healthy mkdocs.yml
README.md software healthy README.md
.git-changelog.toml software healthy .git-changelog.toml
study-settings.yml software healthy study-settings.yml
Makefile software healthy Makefile
LICENSE software healthy LICENSE
main.py software healthy main.py
requirements.txt software healthy requirements.txt
config.yml software healthy .circleci/config.yml
index.md software healthy docs/index.md
changes.md software healthy docs/changes.md
release.md software healthy docs/release.md
qaqc-criteria-preprocessed.md software healthy docs/processing/qaqc-criteria-preprocessed.md
preprocessing.md software healthy docs/processing/preprocessing.md
environment.md software healthy docs/processing/environment.md
qaqc-criteria-FC.md software healthy docs/processing/qaqc-criteria-FC.md
functional-connectivity.md software healthy docs/processing/functional-connectivity.md
extra.css software healthy docs/stylesheets/extra.css
mathjax.js software healthy docs/js/mathjax.js
sample_report.html software healthy docs/assets/files/SampleReport/sample_report.html
__init__.py software healthy docs/analysis/__init__.py
README.md software healthy docs/analysis/README.md
recruitment.md software healthy docs/recruitment-scheduling-screening/recruitment.md
scheduling.md software healthy docs/recruitment-scheduling-screening/scheduling.md
qaqc-general.md software healthy docs/data-management/qaqc-general.md
qaqc-criteria-unprocessed.md software healthy docs/data-management/qaqc-criteria-unprocessed.md
preliminary.md software healthy docs/data-management/preliminary.md
edf-to-bids.md software healthy docs/data-management/edf-to-bids.md
mriqc.md software healthy docs/data-management/mriqc.md
intro.md software healthy docs/data-management/intro.md
post-session.md software healthy docs/data-management/post-session.md
tear-down.md software healthy docs/data-collection/tear-down.md
setup.md software healthy docs/data-collection/setup.md
pre-session.md software healthy docs/data-collection/pre-session.md
notes-scanning.md software healthy docs/data-collection/notes-scanning.md
notes-software.md software healthy docs/data-collection/notes-software.md
notes-et.md software healthy docs/data-collection/notes-et.md
scanning.md software healthy docs/data-collection/scanning.md
tear-up.md software healthy docs/data-collection/tear-up.md
participant-prep.md software healthy docs/data-collection/participant-prep.md
legacy-et.md software healthy docs/data-collection/legacy-et.md
intro.md software healthy docs/data-collection/intro.md
emergency-procedures.md software healthy docs/data-collection/emergency-procedures.md
notes-misc.md software healthy docs/data-collection/notes-misc.md
report.css software healthy design/report.css
__init__.py software healthy code/fmri/__init__.py
reports.py software healthy code/fmri/reports.py
nilearn_patcher.py software healthy code/fmri/nilearn_patcher.py
funconn.py software healthy code/fmri/funconn.py

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

LabelLayerStatusPath
.circleci software healthy .circleci
docs software healthy docs
processing software healthy docs/processing
stylesheets software healthy docs/stylesheets
js software healthy docs/js
assets software healthy docs/assets
files software healthy docs/assets/files
SampleReport software healthy docs/assets/files/SampleReport
analysis software healthy docs/analysis
recruitment-scheduling-screening software healthy docs/recruitment-scheduling-screening
data-management software healthy docs/data-management
data-collection software healthy docs/data-collection
design software healthy design
code software healthy code
fmri software healthy code/fmri
bugfixes software healthy code/bugfixes
data_loader software healthy code/data_loader
tests software healthy code/data_loader/tests
events software healthy code/events
signals software healthy code/signals
tests software healthy code/signals/tests
hcphsignals software healthy code/signals/hcphsignals
confounds software healthy code/confounds
sessions software healthy code/sessions
physioconv software healthy code/physioconv
pacsman software healthy code/pacsman
defacing software healthy code/defacing
synchronization software healthy code/synchronization
analysis software healthy code/analysis
eyetracking software healthy code/eyetracking
dmri software healthy code/dmri
fmriprep software healthy code/fmriprep
datalad software healthy code/datalad
heudiconv software healthy code/heudiconv
qc software healthy code/qc
include software healthy include
boiler software healthy include/boiler
overrides software healthy overrides
.github software healthy .github
workflows software healthy .github/workflows

LabelLayerStatusPath
MultiNiftiMapsMasker software healthy code/fmri/nilearn_patcher.py:69
signals software healthy code/signals/hcphsignals/__init__.py:29
EyeTrackingRun software healthy code/eyetracking/eyetrackingrun.py:85
CompactJSONEncoder software healthy code/eyetracking/ppjson.py:8

LabelLayerStatusPath
gha::deploy cicd healthy .github/workflows/deploy.yml
gha::tests cicd healthy .github/workflows/tests.yml
circleci cicd healthy .circleci/config.yml

LabelLayerStatusPath
sqlite data healthy code/datalad/cfg_bids.py
mongodb data healthy code/qc/from_mongodb_to_dataframe.py

LabelLayerStatusPath
build cicd healthy .github/workflows/deploy.yml
codespell cicd healthy .github/workflows/tests.yml

LabelLayerStatusPath
repobility-clone-yj22tvtq software healthy /tmp/repobility-clone-yj22tvtq

LabelLayerStatusPath
port:20 network healthy code/fmriprep/ss-fmriprep.sh

LabelLayerStatusPath
1.3.12.2 network healthy code/heudiconv/reproin.py
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