Public scan — anyone with this URL can view this analysis. Sign up to track your own repos privately, run scheduled re-scans, and get AI fix prompts via your dashboard.
Sign up free Scan another repo

richard-burhans/galaxy-tool-refactor

https://github.com/richard-burhans/galaxy-tool-refactor · scanned 2026-06-15 23:51 UTC (2 months, 3 weeks ago)

141 raw signals (0 security + 141 graph)

File as issue Image
UNIFIED Repobility · multi-layer engine · AI coders

Complete repo analysis

Last scanned 2 months, 3 weeks ago · v1 · 119 actionable findings from 1 signal source. 22 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

JSON
Combined
63.3
/100
Security checks
63
0 findings
System graph
63
88.9% cov · 119 findings
Critical
0
click to filter
Agents
10
0 votes
Crowd
0
reported
Severity distribution — click a segment to filter
Active filters: excluding tests × Reset all
Severity: Critical 0 High 2 Medium 16 Low 71 9-Layer: Software Security Quality Integrity Frontend Hardware Data Network Cicd Source: Security checks 0 System graph 119 Crowd 0 Layer: Software 11 Frontend 1 Cicd 4 Quality 101 Security 2
Corpus Intelligence Cross-corpus context (cohort percentile, top patterns, fix plan) is shown only on repositories you own. Sign up and connect your repo to view it.
Scan summary Repository scanned at 63.3/100 with 88.9% coverage. It contains 7614 nodes across 0 cross-layer flows, written primarily in mixed languages. Engine surfaced 141 findings — concentrated in quality (118), software (11), cicd (9). Risk profile is high: 0 critical, 2 high, 20 medium. Recommended next step: open the quality layer findings first — that's where the highest-impact wins live.

Showing 89 of 119 actionable findings. 141 raw detector signals were grouped into reader-sized issues. Click TP / FP to vote on a finding's accuracy — votes adjust the confidence weighting and improve detection across the platform.

high System graph security Agent instructions conf 1.00 Agent instruction/config may expose a secret: .claude/skills/dignified-python/dignified-python-core.md
Agent-facing files are routinely pasted into LLM/tool contexts. Move literal tokens, keys, and passwords into a secret manager or document them as placeholders only.
.claude/skills/dignified-python/dignified-python-core.md:70 SecretsClaude instruction
high System graph security Agent instructions conf 1.00 Agent instruction/config may expose a secret: .claude/skills/dignified-python/versions/python-3.10.md
Agent-facing files are routinely pasted into LLM/tool contexts. Move literal tokens, keys, and passwords into a secret manager or document them as placeholders only.
.claude/skills/dignified-python/versions/python-3.10.md:368 SecretsClaude instruction
medium System graph quality Agent instructions conf 1.00 Agent authority lacks a verifier contract: .claude/settings.json
This agent instruction grants code or shell authority but does not state the verification gate that decides promotion. The recurring safe pattern is: LLM proposes; deterministic tests/build/security checks verify; only verified code promotes.
.claude/settings.json VerificationClaude instruction
medium System graph quality Agent instructions conf 1.00 Agent authority lacks a verifier contract: .claude/skills/dignified-python/cli-patterns.md
This agent instruction grants code or shell authority but does not state the verification gate that decides promotion. The recurring safe pattern is: LLM proposes; deterministic tests/build/security checks verify; only verified code promotes.
.claude/skills/dignified-python/cli-patterns.md VerificationClaude instruction
medium System graph quality Agent instructions conf 1.00 Agent authority lacks a verifier contract: .claude/skills/dignified-python/SKILL.md
This agent instruction grants code or shell authority but does not state the verification gate that decides promotion. The recurring safe pattern is: LLM proposes; deterministic tests/build/security checks verify; only verified code promotes.
.claude/skills/dignified-python/SKILL.md VerificationClaude instruction
medium System graph quality Agent instructions conf 1.00 Agent authority lacks a verifier contract: .claude/skills/ship-pr/SKILL.md
This agent instruction grants code or shell authority but does not state the verification gate that decides promotion. The recurring safe pattern is: LLM proposes; deterministic tests/build/security checks verify; only verified code promotes.
.claude/skills/ship-pr/SKILL.md VerificationClaude instruction
medium System graph quality Placeholder conf 1.00 Critical user flow still appears backed by mock or placeholder data
A payment/auth/admin/order/billing-style flow contains mock, fake, TODO, dummy, or placeholder markers in runtime source. In the Fable corpus this is a high-leverage completeness smell: the app can look finished while the money, identity, or tenant flow is still scaffolded.
Mock dataCritical flowGenerated repo pattern
medium System graph cicd CI/CD security conf 1.00 5 occurrences GitHub Action is tag-pinned rather than SHA-pinned
astral-sh/setup-uv@v7 can move without a code change in this repo. Pin third-party actions to a reviewed 40-character commit SHA.
3 files, 5 locations
.github/workflows/corpus-stats.yml:41, 65 (2 hits)
.github/workflows/release.yml:66, 141 (2 hits)
.github/workflows/ci.yml:33
CI/CD securitySupply chainGithub actions
medium System graph cicd CI/CD security conf 1.00 GitHub Actions workflow grants broad write permissions
CI tokens with write permissions increase blast radius when an action, dependency, or PR workflow is compromised. Prefer job-level least-privilege permissions.
.github/workflows/corpus-stats.yml CI/CD securitySupply chainGithub actions
medium System graph cicd CI/CD security conf 1.00 GitHub Actions workflow grants broad write permissions
CI tokens with write permissions increase blast radius when an action, dependency, or PR workflow is compromised. Prefer job-level least-privilege permissions.
.github/workflows/release.yml CI/CD securitySupply chainGithub actions
medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — galaxy-tool-refactor-cli/src/galaxy_tool_refactor_cli/gate_suggest.py:114
`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.
runtime safetyRobustness
medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — galaxy-tool-source/src/galaxy_tool_source/_codegen.py:81
`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.
runtime safetyRobustness
medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — scripts/corpus_check.py:166
`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.
runtime safetyRobustness
medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — scripts/fetch_iuc_prs.py:87
`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.
runtime safetyRobustness
medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — scripts/fetch_toolshed.py:111
`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.
runtime safetyRobustness
medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — scripts/forward_gate.py:56
`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.
runtime safetyRobustness
medium System graph quality Placeholder conf 1.00 Placeholder or mock-heavy implementation detected
Found 93 placeholder/mock markers across 42 source files. This often means the repo looks complete while core flows still use generated scaffolding or fake data.
Mock dataIncompleteGenerated repo pattern
medium System graph quality Placeholder conf 1.00 Runtime service client appears to use placeholder configuration
A runtime source file appears to wire Supabase/Firebase/AI/payment-style clients to placeholder URLs, keys, or fallback values. In the Fable corpus this often means the UI/API shape is present while the backend service is not actually configured.
Runtime configService clientGenerated repo pattern
low System graph quality Debug conf 1.00 Debug logging residue appears in source files
Found 498 console/debugger/print-style debug statements in non-test source. This is a common fast-generation residue before production cleanup.
CleanupRepo hardeningGenerated repo pattern
low System graph cicd CI/CD security conf 1.00 2 occurrences GitHub Action is tag-pinned rather than SHA-pinned
actions/upload-artifact@v7 can move without a code change in this repo. Pin third-party actions to a reviewed 40-character commit SHA.
lines 118, 131
.github/workflows/release.yml:118, 131 (2 hits)
CI/CD securitySupply chainGithub actions
low System graph quality Integrity conf 1.00 18 occurrences Near-duplicate function bodies in 2 places
Functions with the same first-5-line body hash: galaxy-tool-refactor-cli/src/galaxy_tool_refactor_cli/cli.py:format_command, galaxy-tool-refactor-cli/src/galaxy_tool_refactor_cli/cli.py:upgrade_command This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn…
18 occurrences
repo-level (18 hits)
duplicatesduplication
low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 24 places
Functions with the same first-5-line body hash: scripts/measure.py:pct, scripts/measure.py:pct, scripts/measure.py:pct, scripts/measure.py:pct This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn/ai-code-hygiene). Consolidate or document why they're sepa…
duplicatesduplication
low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 3 places
Functions with the same first-5-line body hash: galaxy-tool-refactor-registry/src/galaxy_tool_refactor_registry/adapters.py:detect, galaxy-tool-refactor-registry/src/galaxy_tool_refactor_registry/adapters.py:detect, galaxy-tool-refactor-registry/src/galaxy_tool_refactor_registry/adapters.py:detect …
duplicatesduplication
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `_no_live_old` in galaxy-tool-source/tests/test_cheetah_rename.py:33
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `_references_old` in galaxy-tool-source/src/galaxy_tool_source/cheetah_rename.py:217
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `CommandInterpreterDeprecated` in galaxy-tool-codemod/src/galaxy_tool_codemod/codemods/fix_interpreter.py:81
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `galru_deprecated` in galaxy-tool-source/tests/test_shared.py:22
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `galru_deprecated` in scripts/_shared.py:72
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `make_backup` in galaxy-tool-fmt/src/galaxy_tool_fmt/cli_support.py:67
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `make_backup` in galaxy-tool-fmt/tests/test_cli.py:11
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `make_backup` in galaxy-tool-refactor-cli/src/galaxy_tool_refactor_cli/cli.py:70
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `make_backup` in galaxy-tool-refactor-registry/src/galaxy_tool_refactor_registry/bundle_rename.py:41
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `make_backup` in galaxy-tool-refactor-registry/src/galaxy_tool_refactor_registry/macro_datatype.py:32
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `make_backup` in galaxy-tool-refactor-registry/src/galaxy_tool_refactor_registry/macro_profile.py:34
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `make_backup` in galaxy-tool-refactor-registry/tests/test_serializer_allowlist.py:51
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `SelectOptionsNotDeprecated` in galaxy-tool-lint/src/galaxy_tool_lint/checks/inputs.py:559
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `SelectOptionsNotDeprecated` in galaxy-tool-lint/src/galaxy_tool_lint/detect.py:41
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `StdIOAbsenceLegacy` in galaxy-tool-lint/src/galaxy_tool_lint/checks/tool.py:195
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `test_check_makes_no_backup` in galaxy-tool-refactor-cli/tests/test_cli.py:929
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `test_gtr064_select_options_not_deprecated` in galaxy-tool-lint/tests/test_checks.py:446
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `test_rename_attribute_rejects_absent_old` in galaxy-tool-codemod/tests/test_cursor.py:274
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph software Dead code conf 1.00 Possibly dead Python function: detect_Command
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
galaxy-tool-codemod/src/galaxy_tool_codemod/codemods/wrap_command_cdata.py:39
low System graph software Dead code conf 1.00 Possibly dead Python function: detect_Data
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
galaxy-tool-codemod/src/galaxy_tool_codemod/codemods/fix_from_work_dir_whitespace.py:47
low System graph software Dead code conf 1.00 Possibly dead Python function: detect_Help
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
galaxy-tool-codemod/src/galaxy_tool_codemod/codemods/wrap_help_cdata.py:39
low System graph software Dead code conf 1.00 Possibly dead Python function: detect_Output
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
galaxy-tool-codemod/src/galaxy_tool_codemod/codemods/replace_output_element.py:89
low System graph software Dead code conf 1.00 Possibly dead Python function: detect_Requirement
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
galaxy-tool-codemod/src/galaxy_tool_codemod/codemods/trim_attribute_whitespace.py:70
low System graph software Dead code conf 1.00 Possibly dead Python function: detect_Tool
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
galaxy-tool-codemod/src/galaxy_tool_codemod/codemods/reorder_tool_attributes.py:44
low System graph software Dead code conf 1.00 Possibly dead Python function: detect_Tool
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
galaxy-tool-codemod/src/galaxy_tool_codemod/codemods/reorder_tool_children.py:78
low System graph software Dead code conf 1.00 Possibly dead Python function: initialize
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
galaxy-tool-source/hatch_build.py:27
low System graph software Dead code conf 1.00 Possibly dead Python function: row_source
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
scripts/_shared.py:33
low System graph software Dead code conf 1.00 Possibly dead Python function: sort_key
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
scripts/measure.py:5043
low System graph software Dead code conf 1.00 Possibly dead Python function: unique_by_sha
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
scripts/_shared.py:40
low System graph quality Provenance conf 1.00 Shallow git history limits provenance confidence
The repository is a shallow clone. Origin/evolution analysis cannot distinguish fresh generation, imported legacy code, or long-lived human code with high confidence.
Git historyGenerated repo pattern
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-lint/src/galaxy_tool_lint/checks/inputs.py (1298 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-lint/tests/test_checks.py (1236 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-refactor-cli/src/galaxy_tool_refactor_cli/cli.py (1449 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-refactor-cli/tests/test_cli.py (1230 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-refactor-registry/tests/test_facade.py (1273 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v16_10/galaxy.py (5576 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v17_01/galaxy.py (5692 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v17_05/galaxy.py (5793 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v17_09/galaxy.py (5878 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v18_01/galaxy.py (5965 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v18_05/galaxy.py (5996 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v18_09/galaxy.py (6044 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v19_01/galaxy.py (6120 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v19_05/galaxy.py (6526 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v19_09/galaxy.py (6779 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v20_01/galaxy.py (6839 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v20_05/galaxy.py (6875 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v20_09/galaxy.py (6950 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v21_01/galaxy.py (7380 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v21_05/galaxy.py (7419 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v21_09/galaxy.py (7620 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v22_01/galaxy.py (8605 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v22_05/galaxy.py (8737 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v23_0/galaxy.py (8807 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v23_1/galaxy.py (9078 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v23_2/galaxy.py (9248 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v24_0/galaxy.py (9460 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v24_1/galaxy.py (9985 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v24_2/galaxy.py (11327 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v25_0/galaxy.py (11437 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v25_1/galaxy.py (11686 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v26_0/galaxy.py (11678 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/src/galaxy_tool_source/models/v26_1/galaxy.py (11805 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: galaxy-tool-source/tests/test_measure.py (2621 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: scripts/corpus_check.py (4380 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: scripts/measure.py (9069 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
For AI agents: Voting guide (TP/FP) MCP manifest Stdio wrapper SARIF Integrate Findings queue Vote TP/FP on findings to calibrate the engine.
For AI agents + API integrations
Email me when this repo regresses
Free. We re-scan periodically; new criticals → your inbox. No signup required for the scan itself.
API access

This page is publicly accessible at: https://repobility.com/scan/22bc0f22-1aae-409b-914f-e613d109f86e/

To check status programmatically (no auth required): 

curl -s https://repobility.com/api/v1/public/scan/22bc0f22-1aae-409b-914f-e613d109f86e/

Important — please don't re-submit the same URL repeatedly. The submission endpoint is idempotent: re-submitting the same git URL returns this same scan_token, not a new one. To re-scan this repo, sign up free and use the dashboard.