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Issue title

Ssti Jinja From String

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Top 5 (default)
Severity Rule Title File:line
CRIT MINED107 [MINED107] Missing import: `array` used but not imported: The file uses `array.something(… src/skimage/util/apply_parallel.py:160
CRIT MINED107 [MINED107] Missing import: `random` used but not imported: The file uses `random.somethin… src/skimage/draw/_random_shapes.py:236
CRIT MINED107 [MINED107] Missing import: `array` used but not imported: The file uses `array.something(… src/_skimage2/_shared/utils.py:948
CRIT MINED107 [MINED107] Missing import: `array` used but not imported: The file uses `array.something(… tools/precompute/mc_meta/createluts.py:103
CRIT MINED019 [MINED019] Ssti Jinja From String: jinja2.Environment().from_string(user_input) — full RC… src/skimage/feature/template.py:33
CRIT SEC084 [SEC084] JS: require() with non-literal: require(<variable>) loads arbitrary modules — eq… src/skimage/restoration/unwrap.py:115
CRIT SEC084 [SEC084] JS: require() with non-literal: require(<variable>) loads arbitrary modules — eq… src/_skimage2/_shared/version_requireme…:110
CRIT MINED116 [MINED116] Workflow uses `secrets.UPLOAD_TOKEN` on a `pull_request` trigger: This workflo… .github/workflows/nightly-wheel-build.y…:62
CRIT MINED116 [MINED116] Workflow uses `secrets.CACHE_VERSION` on a `pull_request` trigger: This workfl… .github/workflows/benchmarks.yaml:67
CRIT MINED116 [MINED116] Workflow uses `secrets.CACHE_VERSION` on a `pull_request` trigger: This workfl… .github/workflows/benchmarks.yaml:65
HIGH MINED106 [MINED106] Phantom test coverage: test_root_dir: Test function `test_root_dir` runs code … tests/skimage/conftest.py:6
HIGH MINED108 [MINED108] `self.image` used but never assigned in __init__: Method `setup` of class `Ske… benchmarks/benchmark_morphology.py:26
HIGH MINED108 [MINED108] `self.image` used but never assigned in __init__: Method `time_hessian_matrix_… benchmarks/benchmark_feature.py:33
HIGH MINED108 [MINED108] `self.keypoints` used but never assigned in __init__: Method `time_brief` of c… benchmarks/benchmark_feature.py:30
HIGH MINED108 [MINED108] `self.image` used but never assigned in __init__: Method `time_brief` of class… benchmarks/benchmark_feature.py:30
HIGH MINED108 [MINED108] `self.image_ubyte` used but never assigned in __init__: Method `time_glcm` of … benchmarks/benchmark_feature.py:25
HIGH MINED108 [MINED108] `self.image` used but never assigned in __init__: Method `time_canny` of class… benchmarks/benchmark_feature.py:20
HIGH MINED108 [MINED108] `self.image` used but never assigned in __init__: Method `setup` of class `Fea… benchmarks/benchmark_feature.py:16
HIGH MINED108 [MINED108] `self.image` used but never assigned in __init__: Method `setup` of class `Fea… benchmarks/benchmark_feature.py:14
HIGH MINED108 [MINED108] `self.keypoints` used but never assigned in __init__: Method `setup` of class … benchmarks/benchmark_feature.py:15
HIGH MINED108 [MINED108] `self.image_ubyte` used but never assigned in __init__: Method `setup` of clas… benchmarks/benchmark_feature.py:14
HIGH MINED108 [MINED108] `self.image` used but never assigned in __init__: Method `setup` of class `Fea… benchmarks/benchmark_feature.py:13
HIGH MINED108 [MINED108] `self.footprint_3d` used but never assigned in __init__: Method `time_3d_filte… benchmarks/benchmark_rank.py:29
HIGH MINED108 [MINED108] `self.volume` used but never assigned in __init__: Method `time_3d_filters` of… benchmarks/benchmark_rank.py:29
HIGH MINED108 [MINED108] `self.footprint_3d` used but never assigned in __init__: Method `setup` of cla… benchmarks/benchmark_rank.py:26
HIGH MINED108 [MINED108] `self.volume` used but never assigned in __init__: Method `setup` of class `Ra… benchmarks/benchmark_rank.py:25
HIGH MINED108 [MINED108] `self.footprint` used but never assigned in __init__: Method `time_filter` of … benchmarks/benchmark_rank.py:17
HIGH MINED108 [MINED108] `self.image` used but never assigned in __init__: Method `time_filter` of clas… benchmarks/benchmark_rank.py:17
HIGH MINED108 [MINED108] `self.footprint` used but never assigned in __init__: Method `setup` of class … benchmarks/benchmark_rank.py:14
HIGH MINED108 [MINED108] `self.image` used but never assigned in __init__: Method `setup` of class `Ran… benchmarks/benchmark_rank.py:13
HIGH MINED108 [MINED108] `self.n` used but never assigned in __init__: Method `time_central_pixel` of c… benchmarks/benchmark_graph.py:33
HIGH MINED108 [MINED108] `self.g` used but never assigned in __init__: Method `time_central_pixel` of c… benchmarks/benchmark_graph.py:33
HIGH MINED108 [MINED108] `self.skeleton` used but never assigned in __init__: Method `time_build_pixel_… benchmarks/benchmark_graph.py:30
HIGH MINED108 [MINED108] `self.n` used but never assigned in __init__: Method `setup` of class `GraphSu… benchmarks/benchmark_graph.py:27
HIGH MINED108 [MINED108] `self.g` used but never assigned in __init__: Method `setup` of class `GraphSu… benchmarks/benchmark_graph.py:27
HIGH MINED108 [MINED108] `self.skeleton` used but never assigned in __init__: Method `setup` of class `… benchmarks/benchmark_graph.py:21
HIGH SEC128 [SEC128] Async function without await — fire-and-forget Promise (AI mistake): Async call … tools/precompute/_precompute_nsphere_de…:120
HIGH SEC128 [SEC128] Async function without await — fire-and-forget Promise (AI mistake): Async call … src/skimage/io/_plugins/pil_plugin.py:263
HIGH MINED009 [MINED009] Floats For Money: Variable named price/amount/cost typed as float instead of D… src/skimage/graph/spath.py:33
HIGH MINED009 [MINED009] Floats For Money: Variable named price/amount/cost typed as float instead of D… src/skimage/graph/mcp.py:29
HIGH MINED009 [MINED009] Floats For Money: Variable named price/amount/cost typed as float instead of D… src/skimage/graph/_ncut.py:47
HIGH MINED006 [MINED006] Overcatch Baseexception: except BaseException: ... — prevents Ctrl+C and Syste… src/skimage/_vendored/numpy_lookfor.py:126
HIGH MINED006 [MINED006] Overcatch Baseexception: except BaseException: ... — prevents Ctrl+C and Syste… src/_skimage2/_shared/tester.py:128
HIGH SEC029 [SEC029] Server-Side Request Forgery (SSRF) — outbound HTTP from user input: Outbound HTT… src/skimage/io/util.py:27
HIGH SEC029 [SEC029] Server-Side Request Forgery (SSRF) — outbound HTTP from user input: Outbound HTT… doc/tools/plot_pr.py:55
HIGH MINED001 [MINED001] Bare Except Pass: except: pass or except Exception: pass — silently swallows e… doc/examples/color_exposure/plot_adapt_…:199
HIGH MINED001 [MINED001] Bare Except Pass: except: pass or except Exception: pass — silently swallows e… benchmarks/benchmark_registration.py:10
HIGH MINED001 [MINED001] Bare Except Pass: except: pass or except Exception: pass — silently swallows e… benchmarks/benchmark_metrics.py:6
HIGH MINED115 [MINED115] Action `actions/checkout` pinned to mutable ref `@v5`: `uses: actions/checkout… .github/workflows/test-macos.yaml:49
HIGH MINED115 [MINED115] Action `actions/upload-artifact` pinned to mutable ref `@v4`: `uses: actions/u… .github/workflows/typing.yml:77
HIGH MINED115 [MINED115] Action `actions/setup-python` pinned to mutable ref `@v6`: `uses: actions/setu… .github/workflows/typing.yml:34
HIGH MINED115 [MINED115] Action `actions/checkout` pinned to mutable ref `@v5`: `uses: actions/checkout… .github/workflows/typing.yml:28
HIGH MINED115 [MINED115] Action `actions/upload-artifact` pinned to mutable ref `@v4`: `uses: actions/u… .github/workflows/build-docs.yaml:62
HIGH MINED115 [MINED115] Action `actions/setup-python` pinned to mutable ref `@v6`: `uses: actions/setu… .github/workflows/build-docs.yaml:23
HIGH MINED115 [MINED115] Action `actions/checkout` pinned to mutable ref `@v5`: `uses: actions/checkout… .github/workflows/build-docs.yaml:19
HIGH MINED115 [MINED115] Action `actions/cache` pinned to mutable ref `@v4`: `uses: actions/cache@v4` r… .github/workflows/test-windows.yaml:71
HIGH MINED115 [MINED115] Action `actions/setup-python` pinned to mutable ref `@v6`: `uses: actions/setu… .github/workflows/test-windows.yaml:52
HIGH MINED115 [MINED115] Action `actions/checkout` pinned to mutable ref `@v5`: `uses: actions/checkout… .github/workflows/test-windows.yaml:47
HIGH MINED115 [MINED115] Action `actions/setup-python` pinned to mutable ref `@v6`: `uses: actions/setu… .github/workflows/test-nightlies-on-mai…:39
HIGH MINED115 [MINED115] Action `actions/checkout` pinned to mutable ref `@v5`: `uses: actions/checkout… .github/workflows/test-nightlies-on-mai…:34
HIGH MINED115 [MINED115] Action `actions/upload-artifact` pinned to mutable ref `@v4`: `uses: actions/u… .github/workflows/benchmarks.yaml:112
HIGH MINED115 [MINED115] Action `actions/cache` pinned to mutable ref `@v4`: `uses: actions/cache@v4` r… .github/workflows/benchmarks.yaml:62
HIGH MINED115 [MINED115] Action `actions/setup-python` pinned to mutable ref `@v6`: `uses: actions/setu… .github/workflows/benchmarks.yaml:35
HIGH MINED115 [MINED115] Action `actions/checkout` pinned to mutable ref `@v5`: `uses: actions/checkout… .github/workflows/benchmarks.yaml:31
HIGH MINED115 [MINED115] Action `actions/download-artifact` pinned to mutable ref `@v4`: `uses: actions… .github/workflows/_test_linux_for_pytho…:58
HIGH MINED115 [MINED115] Action `actions/setup-python` pinned to mutable ref `@v6`: `uses: actions/setu… .github/workflows/_test_linux_for_pytho…:52
HIGH MINED115 [MINED115] Action `actions/checkout` pinned to mutable ref `@v5`: `uses: actions/checkout… .github/workflows/_test_linux_for_pytho…:47
HIGH MINED115 [MINED115] Action `actions/upload-artifact` pinned to mutable ref `@v4`: `uses: actions/u… .github/workflows/_build_linux_for_pyth…:72
HIGH MINED115 [MINED115] Action `actions/cache` pinned to mutable ref `@v4`: `uses: actions/cache@v4` r… .github/workflows/_build_linux_for_pyth…:55
HIGH MINED115 [MINED115] Action `actions/setup-python` pinned to mutable ref `@v6`: `uses: actions/setu… .github/workflows/_build_linux_for_pyth…:35
HIGH MINED115 [MINED115] Action `actions/checkout` pinned to mutable ref `@v5`: `uses: actions/checkout… .github/workflows/_build_linux_for_pyth…:30
HIGH MINED115 [MINED115] Action `actions/setup-python` pinned to mutable ref `@v6`: `uses: actions/setu… .github/workflows/test-docs.yaml:25
HIGH MINED115 [MINED115] Action `actions/checkout` pinned to mutable ref `@v5`: `uses: actions/checkout… .github/workflows/test-docs.yaml:20
MED MINED111 [MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r… src/skimage/_vendored/numpy_lookfor.py:129
MED MINED111 [MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r… src/skimage/_vendored/numpy_lookfor.py:29
MED MINED109 [MINED109] Mutable default argument in `_generic_edge_filter` (list): `def _generic_edge_… src/skimage/filters/edges.py:126
MED MINED111 [MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r… src/skimage/filters/thresholding.py:88
MED MINED109 [MINED109] Mutable default argument in `precompute_decompositions` (dict): `def precomput… tools/precompute/_precompute_nsphere_de…:25
MED MINED109 [MINED109] Mutable default argument in `precompute_decompositions` (list): `def precomput… tools/precompute/_precompute_nsphere_de…:25
MED MINED109 [MINED109] Mutable default argument in `_append_msgs` (list): `def _append_msgs(... = []/… doc/tools/migration_utils.py:18
MED SEC127 [SEC127] AI agent stub — TODO: implement / pass placeholder body: Function body left as T… src/skimage/transform/_thin_plate_splin…:132
MED ERR001 [ERR001] Silent Exception Swallowing: Silently swallowing all exceptions hides bugs. Even… src/_skimage2/_shared/testing.py:125
MED SEC045 [SEC045] eval()/exec() on stored or user-supplied data: eval() and exec() on data — even … src/_skimage2/_shared/testing.py:100
MED SEC087 [SEC087] JS: weak Math.random for crypto: Math.random() is not cryptographically secure; … doc/ext/skimage_extensions.py:72
MED COMP001 [COMP001] High cognitive complexity: Function `position_nodes_for_max_tree` has cognitive… doc/examples/developers/plot_max_tree.py:108
MED MINED124 [MINED124] requirements.txt: `sphinx-gallery` has no version pin: Unpinned pip requiremen… .binder/requirements.txt:11
MED MINED124 [MINED124] requirements.txt: `scikit-learn` has no version pin: Unpinned pip requirement … .binder/requirements.txt:7
MED MINED124 [MINED124] requirements.txt: `wheel` has no version pin: Unpinned pip requirement means e… .binder/requirements.txt:6
LOW COMP001 [COMP001] High cognitive complexity: Function `linkcode_resolve` has cognitive complexity… doc/source/conf.py:325
LOW COMP001 [COMP001] High cognitive complexity: Function `setup` has cognitive complexity 12 (SonarS… benchmarks/benchmark_morphology.py:81
LOW AIC003 Duplicated implementation block across source files src/skimage/transform/pyramids.py:55
LOW AIC003 Duplicated implementation block across source files src/skimage/restoration/unwrap_3d_ljmu.c:737
LOW AIC003 Duplicated implementation block across source files src/skimage/registration/_phase_cross_c…:209
LOW AIC003 Duplicated implementation block across source files src/skimage/morphology/gray.py:162
LOW AIC003 Duplicated implementation block across source files src/skimage/metrics/_structural_similar…:87
LOW AIC003 Duplicated implementation block across source files src/skimage/filters/rank/bilateral.py:20
LOW AIC003 Duplicated implementation block across source files src/skimage/filters/edges.py:74
LOW AIC003 Duplicated implementation block across source files src/skimage/filters/_gaussian.py:30
LOW AIC003 Duplicated implementation block across source files src/skimage/feature/_canny.py:34
INFO MINED072 [MINED072] Python Pass Only Class: class Foo: pass — stub waiting to be filled in. src/skimage/future/trainable_segmentati…:11
INFO MINED072 [MINED072] Python Pass Only Class: class Foo: pass — stub waiting to be filled in. src/skimage/feature/_fisher_vector.py:32
INFO MINED077 [MINED077] Python Open No Context: fp = open(path) outside with-block leaks file handles. src/skimage/io/sift.py:42
INFO MINED077 [MINED077] Python Open No Context: fp = open(path) outside with-block leaks file handles. doc/tools/plot_pr.py:105
INFO MINED077 [MINED077] Python Open No Context: fp = open(path) outside with-block leaks file handles. doc/tools/build_modref_templates.py:41
INFO MINED043 [MINED043] Http Not Https: Hardcoded http:// (not localhost) for endpoints that handle cr… doc/examples/edges/plot_contours.py:12
INFO MINED043 [MINED043] Http Not Https: Hardcoded http:// (not localhost) for endpoints that handle cr… doc/examples/color_exposure/plot_rgb_to…:19
INFO MINED043 [MINED043] Http Not Https: Hardcoded http:// (not localhost) for endpoints that handle cr… doc/examples/color_exposure/plot_equali…:17
INFO MINED050 [MINED050] Stub Only Function: Function declared but body is just pass, return None, rais… benchmarks/benchmark_import_time.py:19
INFO MINED050 [MINED050] Stub Only Function: Function declared but body is just pass, return None, rais… benchmarks/benchmark_filters.py:61
INFO MINED050 [MINED050] Stub Only Function: Function declared but body is just pass, return None, rais… benchmarks/benchmark_exposure.py:90
INFO MINED055 [MINED055] Npm Install No Lockfile: Production image runs npm install (resolves new versi… .github/scripts/setup-test-env.sh:41
Reset to top 5 111 findings available (after auto-suppression of test files + won't-fix)

Issue body (markdown)

## Code-quality scan: `scikit-image/scikit-image`

**Score: 92/100 (A-)**  ·  139 findings  ·  scanned 2026-06-05 22:21 UTC  ·  128,601 LOC

| Severity | Count |
|---|---|
| CRITICAL | 10 |
| HIGH | 63 |
| MEDIUM | 15 |
| LOW | 11 |

📊 [Full filterable report](https://repobility.com/scan/3b383cbf-d709-45ec-aa8c-b26d86badcee/)  ·  ![scorecard](https://repobility.com/scan/3b383cbf-d709-45ec-aa8c-b26d86badcee/report.png?v=1780698061-s2)

### Top findings

1. **CRITICAL** `MINED107` — Missing import: `array` used but not imported
   `src/skimage/util/apply_parallel.py:160` · ✓ Repobility
2. **CRITICAL** `MINED107` — Missing import: `random` used but not imported
   `src/skimage/draw/_random_shapes.py:236` · ✓ Repobility
3. **CRITICAL** `MINED107` — Missing import: `array` used but not imported
   `src/_skimage2/_shared/utils.py:948` · ✓ Repobility
4. **CRITICAL** `MINED107` — Missing import: `array` used but not imported
   `tools/precompute/mc_meta/createluts.py:103` · ✓ Repobility
5. **CRITICAL** `MINED019` — Ssti Jinja From String
   `src/skimage/feature/template.py:33` · CWE-94 · ✓ Repobility

---

_Filed automatically. Close this issue if not useful — we won't refile. Full report: https://repobility.com/scan/3b383cbf-d709-45ec-aa8c-b26d86badcee/_
Already filed
This repo publishes a SECURITY.md policy and the scan contains 6 Critical/High security finding(s). Public issue filing would violate coordinated disclosure. Submit privately via the project's security reporting channel.
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Could not determine 'scikit-image/scikit-image' star count (GitHub API rate-limited or unreachable). When in doubt about repo size, prefer opening a focused PR or a discussion rather than an issue.
Already filed
106/148 findings (72%) on this scan are already flagged as test-file, won't-fix, or suppressed. The scan is too noisy to file as a single issue. Curate down to specific actionable findings, or address the FP source first.
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