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zhuojianlook/lab-analysis-suite

https://github.com/zhuojianlook/lab-analysis-suite · scanned 2026-06-16 01:12 UTC (2 months, 1 week ago)

71 raw signals (0 security + 71 graph)

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UNIFIED Repobility · multi-layer engine · AI coders

Complete repo analysis

Last scanned 2 months, 1 week ago · v1 · 68 actionable findings from 1 signal source. 3 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

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Combined
65.6
/100
Security checks
66
0 findings
System graph
66
77.8% cov · 68 findings
Critical
0
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Agents
10
0 votes
Crowd
0
reported
Severity distribution — click a segment to filter
Active filters: excluding tests × Reset all
Severity: Critical 0 High 19 Medium 8 Low 40 9-Layer: Software Security Quality Integrity Frontend Hardware Data Network Cicd Source: Security checks 0 System graph 68 Crowd 0 Layer: Security 21 Cicd 3 Quality 10 Api 34

All 326 nodes from the latest scan, grouped by kind. Each node is a unit the engine identified (file, function, endpoint, table…). Most users won't need this view — it's primarily for debugging the engine's graph extraction or for AI agents that want to enumerate the project structure.

LabelLayerStatusPath
_bundled_rscript software healthy TauriApp/python-sidecar/r_bridge.py:36
_host_rscript software healthy TauriApp/python-sidecar/r_bridge.py:60
_resolve_rscript software healthy TauriApp/python-sidecar/r_bridge.py:91
_r_env software healthy TauriApp/python-sidecar/r_bridge.py:112
_r_prelude software healthy TauriApp/python-sidecar/r_bridge.py:147
check_r software healthy TauriApp/python-sidecar/r_bridge.py:201
run_r software healthy TauriApp/python-sidecar/r_bridge.py:224
run_console software healthy TauriApp/python-sidecar/r_bridge.py:296
dispatch software dead TauriApp/python-sidecar/api_server.py:36
health software healthy TauriApp/python-sidecar/api_server.py:55
version software healthy TauriApp/python-sidecar/api_server.py:60
warmup software healthy TauriApp/python-sidecar/api_server.py:65
main software healthy TauriApp/python-sidecar/api_server.py:100
needed software healthy TauriApp/python-sidecar/r_packages.py:40
list_manifest software healthy TauriApp/python-sidecar/r_packages.py:52
check_packages software healthy TauriApp/python-sidecar/r_packages.py:57
_install_script software healthy TauriApp/python-sidecar/r_packages.py:102
_run_install software healthy TauriApp/python-sidecar/r_packages.py:159
install_packages software healthy TauriApp/python-sidecar/r_packages.py:226
install_status software healthy TauriApp/python-sidecar/r_packages.py:244
_resc software healthy TauriApp/python-sidecar/scrna.py:26
_detect software healthy TauriApp/python-sidecar/scrna.py:30
register software healthy TauriApp/python-sidecar/scrna.py:56
_read_block software healthy TauriApp/python-sidecar/scrna.py:87
_scrna_code software healthy TauriApp/python-sidecar/scrna.py:104
run software healthy TauriApp/python-sidecar/scrna.py:180
status software healthy TauriApp/python-sidecar/scrna.py:190
set_r_env_dir software healthy TauriApp/python-sidecar/config.py:17
_resc software healthy TauriApp/python-sidecar/microbiome.py:32
register software healthy TauriApp/python-sidecar/microbiome.py:47
need software healthy TauriApp/python-sidecar/microbiome.py:48
_dada2_block software healthy TauriApp/python-sidecar/microbiome.py:95
_table_block software healthy TauriApp/python-sidecar/microbiome.py:127
_downstream software healthy TauriApp/python-sidecar/microbiome.py:138
run software healthy TauriApp/python-sidecar/microbiome.py:206
status software healthy TauriApp/python-sidecar/microbiome.py:218
_resc software healthy TauriApp/python-sidecar/spatial.py:25
register software healthy TauriApp/python-sidecar/spatial.py:34
_spatial_code software healthy TauriApp/python-sidecar/spatial.py:62
run software healthy TauriApp/python-sidecar/spatial.py:111
status software healthy TauriApp/python-sidecar/spatial.py:120
_plate_spec software healthy TauriApp/python-sidecar/platemap.py:31
list_plates software healthy TauriApp/python-sidecar/platemap.py:41
_combined software healthy TauriApp/python-sidecar/platemap.py:59
export software healthy TauriApp/python-sidecar/platemap.py:79
app_data_dir software healthy TauriApp/python-sidecar/r_settings.py:23
_settings_path software healthy TauriApp/python-sidecar/r_settings.py:39
load_settings software healthy TauriApp/python-sidecar/r_settings.py:43
save_settings software healthy TauriApp/python-sidecar/r_settings.py:51
get software healthy TauriApp/python-sidecar/r_settings.py:59

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

LabelLayerStatusPath
README.md software healthy README.md
vite.config.ts software healthy TauriApp/vite.config.ts
tailwind.config.ts software healthy TauriApp/tailwind.config.ts
package.json software healthy TauriApp/package.json
tsconfig.node.json software healthy TauriApp/tsconfig.node.json
index.html software healthy TauriApp/index.html
tsconfig.json software healthy TauriApp/tsconfig.json
build-sidecar.sh software healthy TauriApp/scripts/build-sidecar.sh
build-r-env.sh software healthy TauriApp/scripts/build-r-env.sh
Cargo.toml software healthy TauriApp/src-tauri/Cargo.toml
tauri.conf.json software healthy TauriApp/src-tauri/tauri.conf.json
build.rs software healthy TauriApp/src-tauri/build.rs
Cargo.lock software healthy TauriApp/src-tauri/Cargo.lock
default.json software healthy TauriApp/src-tauri/capabilities/default.json
lib.rs software healthy TauriApp/src-tauri/src/lib.rs
main.rs software healthy TauriApp/src-tauri/src/main.rs
r_bridge.py software healthy TauriApp/python-sidecar/r_bridge.py
api_server.py software healthy TauriApp/python-sidecar/api_server.py
r_packages.py software healthy TauriApp/python-sidecar/r_packages.py
scrna.py software healthy TauriApp/python-sidecar/scrna.py
config.py software healthy TauriApp/python-sidecar/config.py
microbiome.py software healthy TauriApp/python-sidecar/microbiome.py
spatial.py software healthy TauriApp/python-sidecar/spatial.py
platemap.py software healthy TauriApp/python-sidecar/platemap.py
r_settings.py software healthy TauriApp/python-sidecar/r_settings.py
xcelligence.py software healthy TauriApp/python-sidecar/xcelligence.py
requirements.txt software healthy TauriApp/python-sidecar/requirements.txt
rjobs.py software healthy TauriApp/python-sidecar/rjobs.py
qpcr.py software healthy TauriApp/python-sidecar/qpcr.py
rnaseq.py software healthy TauriApp/python-sidecar/rnaseq.py
main.tsx software healthy TauriApp/src/main.tsx
App.tsx software healthy TauriApp/src/App.tsx
client.ts software healthy TauriApp/src/api/client.ts
types.ts software healthy TauriApp/src/api/types.ts
AppShell.tsx software healthy TauriApp/src/components/layout/AppShell.tsx
RnaseqView.tsx software healthy TauriApp/src/components/rnaseq/RnaseqView.tsx
MicrobiomeView.tsx software healthy TauriApp/src/components/microbiome/MicrobiomeView.tsx
SpatialView.tsx software healthy TauriApp/src/components/spatial/SpatialView.tsx
QpcrView.tsx software healthy TauriApp/src/components/qpcr/QpcrView.tsx
RStatusBanner.tsx software healthy TauriApp/src/components/shared/RStatusBanner.tsx
JobProgress.tsx software healthy TauriApp/src/components/shared/JobProgress.tsx
RecordTable.tsx software healthy TauriApp/src/components/shared/RecordTable.tsx
JobResults.tsx software healthy TauriApp/src/components/shared/JobResults.tsx
Placeholder.tsx software healthy TauriApp/src/components/shared/Placeholder.tsx
PlotResult.tsx software healthy TauriApp/src/components/shared/PlotResult.tsx
RPackageGate.tsx software healthy TauriApp/src/components/shared/RPackageGate.tsx
UpdaterHost.tsx software healthy TauriApp/src/components/shared/UpdaterHost.tsx
DataPathInput.tsx software healthy TauriApp/src/components/shared/DataPathInput.tsx
PlatemapView.tsx software healthy TauriApp/src/components/platemap/PlatemapView.tsx
XcelligenceView.tsx software healthy TauriApp/src/components/xcelligence/XcelligenceView.tsx

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

LabelLayerStatusPath
GET /api/analysis/check-r api healthy TauriApp/python-sidecar/r_bridge.py
POST /api/analysis/run-r api healthy TauriApp/python-sidecar/r_bridge.py
POST /api/analysis/run-console api healthy TauriApp/python-sidecar/r_bridge.py
GET /api/health api healthy TauriApp/python-sidecar/api_server.py
GET /api/version api healthy TauriApp/python-sidecar/api_server.py
POST /api/analysis/warmup api healthy TauriApp/python-sidecar/api_server.py
GET /api/analysis/packages api healthy TauriApp/python-sidecar/r_packages.py
GET /api/analysis/check-packages api healthy TauriApp/python-sidecar/r_packages.py
POST /api/analysis/install-packages api healthy TauriApp/python-sidecar/r_packages.py
GET /api/analysis/install-status/{job_id} api healthy TauriApp/python-sidecar/r_packages.py
POST /api/scrna/register api healthy TauriApp/python-sidecar/scrna.py
POST /api/scrna/run api healthy TauriApp/python-sidecar/scrna.py
GET /api/scrna/status/{job_id} api healthy TauriApp/python-sidecar/scrna.py
POST /api/microbiome/register api healthy TauriApp/python-sidecar/microbiome.py
POST /api/microbiome/run api healthy TauriApp/python-sidecar/microbiome.py
GET /api/microbiome/status/{job_id} api healthy TauriApp/python-sidecar/microbiome.py
POST /api/spatial/register api healthy TauriApp/python-sidecar/spatial.py
POST /api/spatial/run api healthy TauriApp/python-sidecar/spatial.py
GET /api/spatial/status/{job_id} api healthy TauriApp/python-sidecar/spatial.py
GET /api/platemap/plates api healthy TauriApp/python-sidecar/platemap.py
POST /api/platemap/export api healthy TauriApp/python-sidecar/platemap.py
GET /api/analysis/get-settings api healthy TauriApp/python-sidecar/r_settings.py
POST /api/analysis/set-rscript api healthy TauriApp/python-sidecar/r_settings.py
POST /api/xcelligence/upload api healthy TauriApp/python-sidecar/xcelligence.py
POST /api/xcelligence/process api healthy TauriApp/python-sidecar/xcelligence.py
POST /api/xcelligence/bar-stats api healthy TauriApp/python-sidecar/xcelligence.py
POST /api/xcelligence/plot-line api healthy TauriApp/python-sidecar/xcelligence.py
POST /api/xcelligence/plot-bar api healthy TauriApp/python-sidecar/xcelligence.py
POST /api/qpcr/upload api healthy TauriApp/python-sidecar/qpcr.py
POST /api/qpcr/analyze api healthy TauriApp/python-sidecar/qpcr.py
POST /api/qpcr/plot api healthy TauriApp/python-sidecar/qpcr.py
POST /api/rnaseq/upload api healthy TauriApp/python-sidecar/rnaseq.py
POST /api/rnaseq/run api healthy TauriApp/python-sidecar/rnaseq.py
GET /api/rnaseq/status/{job_id} api healthy TauriApp/python-sidecar/rnaseq.py

LabelLayerStatusPath
TauriApp software healthy TauriApp
scripts software healthy TauriApp/scripts
src-tauri software healthy TauriApp/src-tauri
capabilities software healthy TauriApp/src-tauri/capabilities
src software healthy TauriApp/src-tauri/src
python-sidecar software healthy TauriApp/python-sidecar
src software healthy TauriApp/src
api software healthy TauriApp/src/api
components software healthy TauriApp/src/components
layout software healthy TauriApp/src/components/layout
rnaseq software healthy TauriApp/src/components/rnaseq
microbiome software healthy TauriApp/src/components/microbiome
spatial software healthy TauriApp/src/components/spatial
qpcr software healthy TauriApp/src/components/qpcr
shared software healthy TauriApp/src/components/shared
platemap software healthy TauriApp/src/components/platemap
xcelligence software healthy TauriApp/src/components/xcelligence
scrna software healthy TauriApp/src/components/scrna
store software healthy TauriApp/src/store
styles software healthy TauriApp/src/styles
r-env software healthy r-env
docs software healthy docs
design software healthy docs/design
.github software healthy .github
workflows software healthy .github/workflows

LabelLayerStatusPath
RunRRequest software healthy TauriApp/python-sidecar/r_bridge.py:216
RConsoleRequest software healthy TauriApp/python-sidecar/r_bridge.py:289
PrivateNetworkMiddleware software healthy TauriApp/python-sidecar/api_server.py:32
InstallRequest software healthy TauriApp/python-sidecar/r_packages.py:219
RegisterRequest software healthy TauriApp/python-sidecar/scrna.py:51
RunRequest software healthy TauriApp/python-sidecar/scrna.py:67
RegisterRequest software healthy TauriApp/python-sidecar/microbiome.py:36
RunRequest software healthy TauriApp/python-sidecar/microbiome.py:82
RegisterRequest software healthy TauriApp/python-sidecar/spatial.py:29
RunRequest software healthy TauriApp/python-sidecar/spatial.py:53
ExportRequest software healthy TauriApp/python-sidecar/platemap.py:50
SetRscriptRequest software healthy TauriApp/python-sidecar/r_settings.py:78
FileParams software healthy TauriApp/python-sidecar/xcelligence.py:114
ProcessRequest software healthy TauriApp/python-sidecar/xcelligence.py:121
BarStatsRequest software healthy TauriApp/python-sidecar/xcelligence.py:200
LinePlotRequest software healthy TauriApp/python-sidecar/xcelligence.py:257
BarPlotRequest software healthy TauriApp/python-sidecar/xcelligence.py:315
AnalyzeRequest software healthy TauriApp/python-sidecar/qpcr.py:91
PlotRequest software healthy TauriApp/python-sidecar/qpcr.py:188
UploadRequest software healthy TauriApp/python-sidecar/rnaseq.py:31
RunRequest software healthy TauriApp/python-sidecar/rnaseq.py:70

LabelLayerStatusPath
GITHUB_TOKEN cicd healthy —
TAURI_SIGNING_PRIVATE_KEY_PASSWORD cicd healthy —
MACOS_CERT_P12_BASE64 cicd healthy —
TAURI_SIGNING_PRIVATE_KEY cicd healthy —
MACOS_CERT_PASSWORD cicd healthy —

LabelLayerStatusPath
build-sidecar cicd healthy .github/workflows/release.yml
build-tauri cicd healthy .github/workflows/release.yml
create-release cicd healthy .github/workflows/release.yml

LabelLayerStatusPath
repobility-clone-ebdyn9e0 software healthy /tmp/repobility-clone-ebdyn9e0

LabelLayerStatusPath
127.0.0.1 network healthy README.md

LabelLayerStatusPath
port:8765 network healthy TauriApp/src-tauri/src/lib.rs

LabelLayerStatusPath
App frontend healthy TauriApp/src/App.tsx

LabelLayerStatusPath
gha::release cicd healthy .github/workflows/release.yml
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