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SauersML/gam

https://github.com/SauersML/gam · scanned 2026-06-16 00:04 UTC (2 months, 3 weeks ago)

391 raw signals (0 security + 391 graph)

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UNIFIED Repobility · multi-layer engine · AI coders

Complete repo analysis

Last scanned 2 months, 3 weeks ago · v1 · 289 actionable findings from 1 signal source. 102 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

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69.5
/100
Security checks
70
0 findings
System graph
70
77.8% cov · 289 findings
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Severity: Critical 0 High 6 Medium 10 Low 228 9-Layer: Software Security Quality Integrity Frontend Hardware Data Network Cicd Source: Security checks 0 System graph 289 Crowd 0 Layer: Software 21 Frontend 1 Security 6 Cicd 3 Quality 258

All 5327 nodes from the latest scan, grouped by kind. Each node is a unit the engine identified (file, function, endpoint, table…). Most users won't need this view — it's primarily for debugging the engine's graph extraction or for AI agents that want to enumerate the project structure.

LabelLayerStatusPath
_censored_dataset software healthy tests/bug_hunt_survival_default_likelihood_python_routes_to…
test_default_survival_likelihood_matches_cli_transformation… software healthy tests/bug_hunt_survival_default_likelihood_python_routes_to…
test_sample_seed_reproducibility software healthy tests/test_sample_seed_is_reproducible.py:14
generate_reference software healthy tests/integration_pit_pipeline.py:16
generate_study software healthy tests/integration_pit_pipeline.py:35
write_csv software healthy tests/integration_pit_pipeline.py:77
read_csv software healthy tests/integration_pit_pipeline.py:84
merge_z_into_study software healthy tests/integration_pit_pipeline.py:89
run software healthy tests/integration_pit_pipeline.py:127
skip software healthy tests/integration_pit_pipeline.py:154
main software healthy tests/integration_pit_pipeline.py:160
test_shapes_and_autograd_nu_2_5 software healthy tests/test_basis_descriptor_matern.py:15
test_hessian_shape software healthy tests/test_basis_descriptor_matern.py:42
_periodic_phi software healthy tests/test_sae_manifold_synthetic_quality_ground_truth.py:21
_r2 software healthy tests/test_sae_manifold_synthetic_quality_ground_truth.py:30
_best_binary_assignment_accuracy software healthy tests/test_sae_manifold_synthetic_quality_ground_truth.py:36
_oracle_periodic_decoder software healthy tests/test_sae_manifold_synthetic_quality_ground_truth.py:43
_planted_one_hot_periodic software healthy tests/test_sae_manifold_synthetic_quality_ground_truth.py:69
test_periodic_basis_public_entrypoints_agree_after_wrapping software healthy tests/test_sae_manifold_synthetic_quality_ground_truth.py:89
test_oos_fixed_decoder_recovers_one_hot_oracle_assignments software healthy tests/test_sae_manifold_synthetic_quality_ground_truth.py:1…
test_fit_learns_disjoint_periodic_atoms_without_inactive_le… software healthy tests/test_sae_manifold_synthetic_quality_ground_truth.py:1…
test_fit_oos_quality_matches_training_on_planted_oracle_dis… software healthy tests/test_sae_manifold_synthetic_quality_ground_truth.py:1…
_planted_circle software healthy tests/test_sae_manifold_synthetic_quality_ground_truth.py:2…
test_isometry_on_circle_recovers_planted_geometry_normalize… software healthy tests/test_sae_manifold_synthetic_quality_ground_truth.py:2…
test_response_geometry_alr_reference_roundtrip_preserves_ro… software healthy tests/response_geometry_alr_reference_roundtrip.py:13
_circle software healthy tests/test_structure_certificate_1058.py:28
_fit software healthy tests/test_structure_certificate_1058.py:38
test_structure_certificate_shape_and_consistency software healthy tests/test_structure_certificate_1058.py:52
test_confirmed_set_matches_independent_e_bh software healthy tests/test_structure_certificate_1058.py:77
test_stricter_alpha_never_grows_confirmed_set software healthy tests/test_structure_certificate_1058.py:96
test_contested_is_unconfirmed_complement software healthy tests/test_structure_certificate_1058.py:105
test_certificate_round_trips_through_to_dict software healthy tests/test_structure_certificate_1058.py:116
_multimodal_atom_data software healthy tests/test_sae_manifold_jumprelu_active_set_dynamics.py:30
_r2 software healthy tests/test_sae_manifold_jumprelu_active_set_dynamics.py:54
_active_sets software healthy tests/test_sae_manifold_jumprelu_active_set_dynamics.py:60
test_jumprelu_active_sets_change_across_iterations software healthy tests/test_sae_manifold_jumprelu_active_set_dynamics.py:66
test_jumprelu_reconstruction_stable_with_variable_active_se… software healthy tests/test_sae_manifold_jumprelu_active_set_dynamics.py:129
_circle_data software healthy tests/test_sae_manifold_ibp_prior_saturation.py:27
_multi_harmonic_data software healthy tests/test_sae_manifold_ibp_prior_saturation.py:40
_evidence software healthy tests/test_sae_manifold_ibp_prior_saturation.py:62
_select_k software healthy tests/test_sae_manifold_ibp_prior_saturation.py:80
test_reml_resolves_true_k_under_prior_saturation software healthy tests/test_sae_manifold_ibp_prior_saturation.py:99
test_ibp_assignments_decay_not_truncate_under_saturation software healthy tests/test_sae_manifold_ibp_prior_saturation.py:115
test_reml_keeps_k1_winner_under_saturation software healthy tests/test_sae_manifold_ibp_prior_saturation.py:143
test___all___matches_real_exports software healthy tests/test_public_all_matches_exported_names.py:12
test_periodic_derivative_matches_central_differences software healthy tests/test_bug_hunt_periodic_bspline_derivative.py:25
test_periodic_dense_derivative_equals_squeezed_core_jet software healthy tests/test_bug_hunt_periodic_bspline_derivative.py:52
test_periodic_derivative_finite_difference_sweep software healthy tests/test_bug_hunt_periodic_bspline_derivative.py:73
test_periodic_derivative_order_zero_returns_value_basis software healthy tests/test_bug_hunt_periodic_bspline_derivative.py:91
test_periodic_derivative_is_genuinely_periodic_at_seam software healthy tests/test_bug_hunt_periodic_bspline_derivative.py:102

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

LabelLayerStatusPath
rust-toolchain.toml software healthy rust-toolchain.toml
README_PYPI.md software healthy README_PYPI.md
Cargo.toml software healthy Cargo.toml
mkdocs.yml software healthy mkdocs.yml
README.md software healthy README.md
rustfmt.toml software healthy rustfmt.toml
install.sh software healthy install.sh
build.rs software healthy build.rs
.readthedocs.yaml software healthy .readthedocs.yaml
SPEC.md software healthy SPEC.md
pyproject.toml software healthy pyproject.toml
LICENSE software healthy LICENSE
CHANGELOG.md software healthy CHANGELOG.md
arrow_schur_block_solve_matches_dense_identity.rs software healthy tests/arrow_schur_block_solve_matches_dense_identity.rs
spd_retraction_preserves_positive_definiteness.rs software healthy tests/spd_retraction_preserves_positive_definiteness.rs
identifiability_audit_skewness_aware.rs software healthy tests/identifiability_audit_skewness_aware.rs
bug_hunt_survival_default_likelihood_python_routes_to_broke… software healthy tests/bug_hunt_survival_default_likelihood_python_routes_to…
quality_vs_mgcv_confidence_interval_gaussian_response_scale… software healthy tests/quality_vs_mgcv_confidence_interval_gaussian_response…
additive_models_new_smooths.rs software healthy tests/additive_models_new_smooths.rs
test_sample_seed_is_reproducible.py software healthy tests/test_sample_seed_is_reproducible.py
sphere_binomial_logit_fit.rs software healthy tests/sphere_binomial_logit_fit.rs
integration_pit_pipeline.py software healthy tests/integration_pit_pipeline.py
test_basis_descriptor_matern.py software healthy tests/test_basis_descriptor_matern.py
reml_scale_invariance.rs software healthy tests/reml_scale_invariance.rs
matern_formula_integration.rs software healthy tests/matern_formula_integration.rs
test_sae_manifold_synthetic_quality_ground_truth.py software healthy tests/test_sae_manifold_synthetic_quality_ground_truth.py
issue_239_poincare_self_distance.rs software healthy tests/issue_239_poincare_self_distance.rs
bug_hunt_gamma_quantile_small_shape_lower_tail.rs software healthy tests/bug_hunt_gamma_quantile_small_shape_lower_tail.rs
aniso_integration.rs software healthy tests/aniso_integration.rs
retraction_round_trip_sphere_log_exp_consistency.rs software healthy tests/retraction_round_trip_sphere_log_exp_consistency.rs
response_geometry_alr_reference_roundtrip.py software healthy tests/response_geometry_alr_reference_roundtrip.py
gpu_required_tests_did_not_skip.rs software healthy tests/gpu_required_tests_did_not_skip.rs
test_structure_certificate_1058.py software healthy tests/test_structure_certificate_1058.py
lbfgs_secant_pair_curvature_positive.rs software healthy tests/lbfgs_secant_pair_curvature_positive.rs
constant_curvature_kappa_outer_gradient_fd.rs software healthy tests/constant_curvature_kappa_outer_gradient_fd.rs
quality_vs_gamlss_negbin_dispersion_location_scale_1060.rs software healthy tests/quality_vs_gamlss_negbin_dispersion_location_scale_10…
large_scale_ctn_bootstrap_repro.rs software healthy tests/large_scale_ctn_bootstrap_repro.rs
test_sae_manifold_jumprelu_active_set_dynamics.py software healthy tests/test_sae_manifold_jumprelu_active_set_dynamics.py
periodic_default_period_behavior.rs software healthy tests/periodic_default_period_behavior.rs
duchon_kernel_accuracy_bench.rs software healthy tests/duchon_kernel_accuracy_bench.rs
effective_jacobian_at_bms_marginal_slope.rs software healthy tests/effective_jacobian_at_bms_marginal_slope.rs
quality_vs_simplex_dirichlet_regression.rs software healthy tests/quality_vs_simplex_dirichlet_regression.rs
quality_vs_mgcv_gaussian_smooth.rs software healthy tests/quality_vs_mgcv_gaussian_smooth.rs
effective_jacobian_at_gamlss.rs software healthy tests/effective_jacobian_at_gamlss.rs
pathological_rank_deficient_design_diagnostic.rs software healthy tests/pathological_rank_deficient_design_diagnostic.rs
sphere_near_pole_predict_stability.rs software healthy tests/sphere_near_pole_predict_stability.rs
layer_transport_functorial.rs software healthy tests/layer_transport_functorial.rs
test_sae_manifold_ibp_prior_saturation.py software healthy tests/test_sae_manifold_ibp_prior_saturation.py
bug_hunt_beta_phi_smooth_plus_parametric.rs software healthy tests/bug_hunt_beta_phi_smooth_plus_parametric.rs
autodiff_crosscheck.rs software healthy tests/autodiff_crosscheck.rs

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

LabelLayerStatusPath
_FakeRust software healthy tests/test_sae_dictionary_k_preserved.py:7
_Fit software healthy tests/test_select_topology_rank_ordering.py:5
_StubFit software healthy tests/test_topology_stack_consumer.py:16
_CapturingRust software healthy tests/test_topology_stack_consumer.py:43
_Exploding software healthy tests/test_topology_stack_consumer.py:114
_Degenerate software healthy tests/test_topology_stack_consumer.py:138
_Pytest software healthy tests/conftest.py:16
_IdentifiableModel software healthy tests/test_diagnostics_composite.py:15
_NonIdentifiableModel software healthy tests/test_diagnostics_composite.py:29
LargeScaleRunnerTests software healthy tests/bench_large_scale_runner_test.py:28
MarkerPatternTests software healthy tests/bench_large_scale_runner_test.py:544
PhaseSummaryAggregationTests software healthy tests/bench_large_scale_runner_test.py:943
DefaultBenchmarkConfigTests software healthy tests/bench_large_scale_runner_test.py:1557
_Pytest software healthy tests/test_survival_save_load_roundtrip.py:14
_FakeRustModule software healthy tests/test_sae_manifold_ibp_refresh.py:6
_FakeRust software healthy tests/test_bernoulli_marginal_slope_predict_shape.py:26
_ClippingRust software healthy tests/test_bernoulli_marginal_slope_predict_shape.py:107
RunSuiteMappingTests software healthy tests/bench_run_suite_mapping_test.py:92
_Pytest software healthy tests/test_tables.py:7
_Fit software healthy tests/test_select_topology_score_kinds.py:14
_FakeRust software healthy tests/test_sae_assignment_and_schedule_bridge.py:9
_FakeRustModule software healthy tests/test_sae_manifold_softmax_dispatch.py:6
_Fit software healthy tests/test_select_topology_summary_payload_issue_395.py:81
_CapturingRustModule software healthy tests/test_sae_manifold_recent_surface.py:25
_SurvivalPredictionWithFailure software healthy tests/test_python_api.py:24
_ModelTermDiagnostics software healthy tests/test_python_api.py:28
_PytestModule software healthy tests/test_survival_api_regressions.py:8
FuzzVsMgcvSelectionTests software healthy tests/bench_fuzz_vs_mgcv_test.py:43
FuzzCiGateTests software healthy tests/bench_fuzz_vs_mgcv_test.py:138
FuzzRamGuardTests software healthy tests/bench_fuzz_vs_mgcv_test.py:258
DummyCoordinateModel software healthy tests/test_response_geometry.py:101
_PytestModule software healthy tests/test_pyffi_bug_hunt4.py:5
_FakeModel software healthy tests/test_sae_distilled_encoder.py:76
_Pytest software healthy tests/test_save_load_preserves_training_table_kind.py:23
_StubModule software healthy tests/test_sae_facade_audit.py:128
_FakeRustModule software healthy tests/test_sae_facade_audit.py:202
_StubSAE software healthy tests/test_diagnostics_anchor_consistency.py:21
RunSuiteOptionalImportTests software healthy tests/bench_run_suite_optional_imports_test.py:12
_LinearHead software healthy tests/test_sae_manifold_fisher_shard_roundtrip.py:41
MgcvModule software healthy tests/bench_tools/bench.py:23
ProfileSection software healthy tests/bench_tools/bench.py:36
_PytestMark software healthy tests/torch/test_end_to_end.py:14
_Pytest software healthy tests/torch/test_end_to_end.py:18
PseudoMpsTensor software healthy tests/torch/test_coerce_mps_float64_issue_362.py:50
FitSpec software healthy scripts/duchon_1d_power_compare.py:24
FuzzScenario software healthy bench/fuzz_vs_mgcv.py:60
FuzzResult software healthy bench/fuzz_vs_mgcv.py:78
SynthConfig software healthy bench/synth_sae_bench_manifold.py:33
BenchmarkMetrics software healthy bench/synth_sae_bench_manifold.py:48
SynthSAEBenchData software healthy bench/synth_sae_bench_manifold.py:77

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

LabelLayerStatusPath
tests software healthy tests
test_support software healthy tests/test_support
common software healthy tests/common
src_modules software healthy tests/src_modules
bench_tools software healthy tests/bench_tools
torch software healthy tests/torch
docs software healthy docs
stylesheets software healthy docs/stylesheets
scripts software healthy scripts
docs_figures software healthy scripts/docs_figures
crates software healthy crates
gam-pyffi software healthy crates/gam-pyffi
tests software healthy crates/gam-pyffi/tests
src_modules software healthy crates/gam-pyffi/tests/src_modules
src software healthy crates/gam-pyffi/src
bench software healthy bench
gwas_portability software healthy bench/gwas_portability
margslope_plain software healthy bench/margslope_plain
large_scale software healthy bench/large_scale
margslope_smoke software healthy bench/margslope_smoke
cargo_benches software healthy bench/cargo_benches
perf software healthy bench/perf
examples software healthy examples
perf software healthy examples/perf
gamfit software healthy gamfit
torch software healthy gamfit/torch
diagnostics software healthy gamfit/diagnostics
examples software healthy gamfit/examples
.github software healthy .github
scripts software healthy .github/scripts
workflows software healthy .github/workflows
actions software healthy .github/actions
setup-bench-r software healthy .github/actions/setup-bench-r
bench-setup software healthy .github/actions/bench-setup
src software healthy src
test_support software healthy src/test_support
util software healthy src/util
families software healthy src/families
survival_marginal_slope software healthy src/families/survival_marginal_slope
timepoint_exact software healthy src/families/survival_marginal_slope/timepoint_exact
survival_location_scale software healthy src/families/survival_location_scale
bms software healthy src/families/bms
gpu software healthy src/families/bms/gpu
gamlss software healthy src/families/gamlss
gaussian software healthy src/families/gamlss/gaussian
binomial software healthy src/families/gamlss/binomial
custom_family software healthy src/families/custom_family
transformation_normal software healthy src/families/transformation_normal
gpu software healthy src/gpu
cubic_cell software healthy src/gpu/cubic_cell

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

LabelLayerStatusPath
fix cicd healthy .github/workflows/claude-fixer.yml
gate cicd healthy .github/workflows/build-release-all.yml
build cicd healthy .github/workflows/build-release-all.yml
release cicd healthy .github/workflows/build-release-all.yml
fmt cicd healthy .github/workflows/test.yml
clippy cicd healthy .github/workflows/test.yml
test cicd healthy .github/workflows/test.yml
python-tests cicd healthy .github/workflows/test.yml
prepare cicd healthy .github/workflows/large_scale.yml
bootstrap-runtime cicd healthy .github/workflows/large_scale.yml
benchmark cicd healthy .github/workflows/large_scale.yml
aggregate cicd healthy .github/workflows/large_scale.yml
gate cicd healthy .github/workflows/pypi-wheels.yml
linux cicd healthy .github/workflows/pypi-wheels.yml
musllinux cicd healthy .github/workflows/pypi-wheels.yml
macos cicd healthy .github/workflows/pypi-wheels.yml
windows cicd healthy .github/workflows/pypi-wheels.yml
sdist cicd healthy .github/workflows/pypi-wheels.yml
release cicd healthy .github/workflows/pypi-wheels.yml
check_unreleased cicd healthy .github/workflows/claude-merger.yml
release cicd healthy .github/workflows/claude-merger.yml
build cicd healthy .github/workflows/docs.yml
claude cicd healthy .github/workflows/claude.yml
hunt cicd healthy .github/workflows/claude-bug-hunt.yml
reference-quality cicd healthy .github/workflows/reference-quality.yml
prepare cicd healthy .github/workflows/benchmark.yml
bootstrap-runtime cicd healthy .github/workflows/benchmark.yml
bench-shard cicd healthy .github/workflows/benchmark.yml
bench-shard-serial cicd healthy .github/workflows/benchmark.yml
aggregate cicd healthy .github/workflows/benchmark.yml
fuzz cicd healthy .github/workflows/fuzz.yml
publish cicd healthy .github/workflows/publish.yml

LabelLayerStatusPath
gha::claude-fixer cicd healthy .github/workflows/claude-fixer.yml
gha::build-release-all cicd healthy .github/workflows/build-release-all.yml
gha::test cicd healthy .github/workflows/test.yml
gha::large_scale cicd healthy .github/workflows/large_scale.yml
gha::pypi-wheels cicd healthy .github/workflows/pypi-wheels.yml
gha::claude-merger cicd healthy .github/workflows/claude-merger.yml
gha::docs cicd healthy .github/workflows/docs.yml
gha::claude cicd healthy .github/workflows/claude.yml
gha::claude-bug-hunt cicd healthy .github/workflows/claude-bug-hunt.yml
gha::reference-quality cicd healthy .github/workflows/reference-quality.yml
gha::benchmark cicd healthy .github/workflows/benchmark.yml
gha::fuzz cicd healthy .github/workflows/fuzz.yml
gha::publish cicd healthy .github/workflows/publish.yml

LabelLayerStatusPath
BENCH_RUNTIME_CACHE_VERSION cicd healthy —
PYPI_API_TOKEN cicd healthy —
GITHUB_TOKEN cicd healthy —
CARGO_REGISTRY_TOKEN cicd healthy —
CLAUDE_CODE_OAUTH_TOKEN cicd healthy —
CRATES_KEY cicd healthy —
BENCH_R_VERSION cicd healthy —

LabelLayerStatusPath
auth::tests/ridge_ledger_invariants.rs security healthy tests/ridge_ledger_invariants.rs
auth::src/solver/gpu/pirls_gpu.rs security healthy src/solver/gpu/pirls_gpu.rs
auth::src/solver/pirls/state.rs security healthy src/solver/pirls/state.rs
auth::src/solver/reml/mod.rs security healthy src/solver/reml/mod.rs
auth::src/types.rs security healthy src/types.rs

LabelLayerStatusPath
port:07 network healthy .github/workflows/large_scale.yml
port:02 network healthy .github/workflows/large_scale.yml

LabelLayerStatusPath
repobility-clone-4qh0mwsx software healthy /tmp/repobility-clone-4qh0mwsx

LabelLayerStatusPath
gpu (detected) hardware healthy Cargo.toml
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