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Issue title

`self.initialize_pairs` used but never assigned in __init__

Curate findings to include

Pick exactly which findings appear in the issue body. By default the top 5 are included. Uncheck noise, check what matters.

Top 5 (default)
Severity Rule Title File:line
HIGH MINED108 `self.save_final` used but never assigned in __init__ EJT_pipeline.py:722
HIGH MINED108 `self.run_round` used but never assigned in __init__ EJT_pipeline.py:710
HIGH MINED108 `self.save_final` used but never assigned in __init__ EJT_pipeline.py:733
HIGH MINED108 `self.initial_generation` used but never assigned in __init__ EJT_pipeline.py:706
HIGH MINED108 `self.initialize_pairs` used but never assigned in __init__ EJT_pipeline.py:701
HIGH MINED108 `self.apply_refinement` used but never assigned in __init__ EJT_pipeline.py:643
HIGH MINED108 `self.apply_refinement` used but never assigned in __init__ EJT_pipeline.py:622
HIGH CORE_NO_TESTS No test files found —
MED MINED111 Bare except continues silently EJT_pipeline.py:348
MED CORE_LARGE_FILES Average file size is 764 lines (recommend <300) —
MED CORE_NO_CI No CI/CD configuration found —
LOW CORE_NO_LICENSE No LICENSE file —
Reset to top 5 12 findings available (after auto-suppression of test files + won't-fix)

Issue body (markdown)

## Code-quality scan: `anonymous-ejt/EJT`

**Score: 75/100 (D)**  ·  12 findings  ·  scanned 2026-05-26 08:12 UTC  ·  764 LOC

| Severity | Count |
|---|---|
| CRITICAL | 0 |
| HIGH | 8 |
| MEDIUM | 3 |
| LOW | 1 |

📊 [Full filterable report](https://repobility.com/scan/58ebeea9-52d3-4e64-ade0-e0192395250c/)  ·  ![scorecard](https://repobility.com/scan/58ebeea9-52d3-4e64-ade0-e0192395250c/report.png?v=1779783174-s2)

### Top findings

1. **HIGH** `MINED108` — `self.save_final` used but never assigned in __init__
   `EJT_pipeline.py:722` · ✓ Repobility
2. **HIGH** `MINED108` — `self.run_round` used but never assigned in __init__
   `EJT_pipeline.py:710` · ✓ Repobility
3. **HIGH** `MINED108` — `self.save_final` used but never assigned in __init__
   `EJT_pipeline.py:733` · ✓ Repobility
4. **HIGH** `MINED108` — `self.initial_generation` used but never assigned in __init__
   `EJT_pipeline.py:706` · ✓ Repobility
5. **HIGH** `MINED108` — `self.initialize_pairs` used but never assigned in __init__
   `EJT_pipeline.py:701` · ✓ Repobility

---

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