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BaranziniLab/biorouter

https://github.com/BaranziniLab/biorouter · scanned 2026-06-17 01:21 UTC (1 month, 2 weeks ago)

172 raw signals (0 security + 172 graph)

UNIFIED Repobility · multi-layer engine · AI coders

Complete repo analysis

Last scanned 1 month, 2 weeks ago · v2 · last Δ -16.3 (diff) · 156 actionable findings from 1 signal source. 16 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

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Scan summary Repository scanned at 60.4/100 with 100.0% coverage. It contains 3419 nodes across 22 cross-layer flows, written primarily in mixed languages. Engine surfaced 172 findings — concentrated in quality (78), frontend (71), security (13). Risk profile is high: 2 critical, 4 high, 40 medium. Recommended next step: open the quality layer findings first — that's where the highest-impact wins live.

Showing 95 of 156 actionable findings. 172 raw detector signals were grouped into reader-sized issues. Click TP / FP to vote on a finding's accuracy — votes adjust the confidence weighting and improve detection across the platform.

critical System graph security security conf 1.00 Insecure pattern 'private_key_in_repo' in crates/biorouter/src/providers/gcpauth.rs:879
Found a known-risky pattern (private_key_in_repo). Review and replace if possible.
crates/biorouter/src/providers/gcpauth.rs:879 Private key in repo
critical System graph security Secrets conf 1.00 Possible secret in scripts/release.sh
Detected pattern matching password_literal. Rotate the credential and move to a secret manager.
scripts/release.sh:63
high System graph hardware Supply chain conf 1.00 2 occurrences Dockerfile pipes a remote installer into a shell
Executing downloaded code during image build gives the remote endpoint build-time code execution. Prefer pinned packages or verify downloaded installers by checksum/signature.
lines 35, 41
recipe-scanner/Dockerfile:35, 41 (2 hits)
containersRemote installer
high System graph security security conf 1.00 Insecure pattern 'subprocess_shell_true' in crates/biorouter-mcp/src/computercontroller/platform/linux.rs:183
Found a known-risky pattern (subprocess_shell_true). Review and replace if possible.
crates/biorouter-mcp/src/computercontroller/platform/linux.rs:183 Subprocess shell true
high System graph security Secrets conf 1.00 Runtime dotenv file present in repo: ui/desktop/.env
`ui/desktop/.env` looks like a runtime dotenv file. No high-confidence secret value was matched, but runtime dotenv files often drift into live credentials. Move real values to a secret manager and keep only `.env.example` style templates in source control.
ui/desktop/.env ConfigEnv fileRuntime env
medium System graph quality Integrity conf 1.00 `fetch()` without try/.catch or AbortSignal — crates/biorouter-mcp/src/autovisualiser/templates/assets/d3.min.js:2
Bare `fetch(...)` will throw an unhandled rejection on network failure. Wrap in try/catch, attach a `.catch(...)`, or pass an AbortSignal with a timeout.
runtime safetyRobustness
medium System graph quality Integrity conf 1.00 `fetch()` without try/.catch or AbortSignal — ui/desktop/src/components/knowledge/hooks/knowledgeRequest.ts:52
Bare `fetch(...)` will throw an unhandled rejection on network failure. Wrap in try/catch, attach a `.catch(...)`, or pass an AbortSignal with a timeout.
runtime safetyRobustness
medium System graph quality Integrity conf 1.00 `fetch()` without try/.catch or AbortSignal — ui/desktop/src/components/settings/sessions/SessionSharingSection.tsx:106
Bare `fetch(...)` will throw an unhandled rejection on network failure. Wrap in try/catch, attach a `.catch(...)`, or pass an AbortSignal with a timeout.
runtime safetyRobustness
medium System graph quality Integrity conf 1.00 `fetch()` without try/.catch or AbortSignal — ui/desktop/src/components/UpdateAvailableModal.tsx:63
Bare `fetch(...)` will throw an unhandled rejection on network failure. Wrap in try/catch, attach a `.catch(...)`, or pass an AbortSignal with a timeout.
runtime safetyRobustness
medium System graph quality Integrity conf 1.00 `fetch()` without try/.catch or AbortSignal — ui/desktop/src/hooks/useWhisper.ts:190
Bare `fetch(...)` will throw an unhandled rejection on network failure. Wrap in try/catch, attach a `.catch(...)`, or pass an AbortSignal with a timeout.
runtime safetyRobustness
medium System graph quality Integrity conf 1.00 `fetch()` without try/.catch or AbortSignal — ui/desktop/src/main.ts:3366
Bare `fetch(...)` will throw an unhandled rejection on network failure. Wrap in try/catch, attach a `.catch(...)`, or pass an AbortSignal with a timeout.
runtime safetyRobustness
medium System graph quality Integrity conf 1.00 `fetch()` without try/.catch or AbortSignal — ui/desktop/src/utils/extensionUpdater.ts:116
Bare `fetch(...)` will throw an unhandled rejection on network failure. Wrap in try/catch, attach a `.catch(...)`, or pass an AbortSignal with a timeout.
runtime safetyRobustness
medium System graph quality Integrity conf 1.00 `fetch()` without try/.catch or AbortSignal — ui/desktop/src/utils/githubUpdater.ts:49
Bare `fetch(...)` will throw an unhandled rejection on network failure. Wrap in try/catch, attach a `.catch(...)`, or pass an AbortSignal with a timeout.
runtime safetyRobustness
medium System graph quality Agent instructions conf 1.00 Agent authority lacks a verifier contract: CLAUDE.md
This agent instruction grants code or shell authority but does not state the verification gate that decides promotion. The recurring safe pattern is: LLM proposes; deterministic tests/build/security checks verify; only verified code promotes.
CLAUDE.md VerificationClaude instruction
medium System graph quality Agent instructions conf 1.00 Agent authority lacks a verifier contract: crates/biorouter/src/agents/builtin_skills/about-biorouter/SKILL.md
This agent instruction grants code or shell authority but does not state the verification gate that decides promotion. The recurring safe pattern is: LLM proposes; deterministic tests/build/security checks verify; only verified code promotes.
crates/biorouter/src/agents/builtin_skills/about-biorouter/SKILL.md VerificationSkill file
medium System graph quality Placeholder conf 1.00 Critical user flow still appears backed by mock or placeholder data
A payment/auth/admin/order/billing-style flow contains mock, fake, TODO, dummy, or placeholder markers in runtime source. In the Fable corpus this is a high-leverage completeness smell: the app can look finished while the money, identity, or tenant flow is still scaffolded.
Mock dataCritical flowGenerated repo pattern
medium System graph hardware Security conf 1.00 Dockerfile runs as root: .devcontainer/Dockerfile
No non-root USER set. Containers running as root expand the blast radius of any vulnerability inside the image.
Container
medium System graph quality Integrity conf 1.00 16 occurrences Frontend route `launcher` has no Link/navigate to it — ui/desktop/src/App.tsx
The route is registered but no `<Link to=…>` or `navigate(…)` in the codebase navigates here. Either it's reachable only via direct URL (intentional), it's dead, or the link broke during a refactor.
16 occurrences
repo-level (16 hits)
Orphan pageWiring
medium System graph security security conf 1.00 Insecure pattern 'direct_innerhtml_assignment' in crates/biorouter-cli/static/script.js:62
Found a known-risky pattern (direct_innerhtml_assignment). Review and replace if possible.
crates/biorouter-cli/static/script.js:62 Direct innerhtml assignment
medium System graph security security conf 1.00 Insecure pattern 'local_storage_auth_token' in ui/desktop/src/components/settings/sessions/SessionSharingSection.tsx:37
Found a known-risky pattern (local_storage_auth_token). Review and replace if possible.
ui/desktop/src/components/settings/sessions/SessionSharingSection.tsx:37 Local storage auth token
medium System graph security security conf 1.00 Insecure pattern 'node_child_process' in ui/desktop/scripts/download-mingit.js:16
Found a known-risky pattern (node_child_process). Review and replace if possible.
ui/desktop/scripts/download-mingit.js:16 Node child process
medium System graph security security conf 1.00 Insecure pattern 'node_child_process' in ui/desktop/scripts/fetch-llama-server.js:19
Found a known-risky pattern (node_child_process). Review and replace if possible.
ui/desktop/scripts/fetch-llama-server.js:19 Node child process
medium System graph security security conf 1.00 Insecure pattern 'node_child_process' in ui/desktop/scripts/unregister-deeplink-protocols.js:8
Found a known-risky pattern (node_child_process). Review and replace if possible.
ui/desktop/scripts/unregister-deeplink-protocols.js:8 Node child process
medium System graph security security conf 1.00 Insecure pattern 'node_child_process' in ui/desktop/src/biorouterd.ts:3
Found a known-risky pattern (node_child_process). Review and replace if possible.
ui/desktop/src/biorouterd.ts:3 Node child process
medium System graph security security conf 1.00 Insecure pattern 'node_child_process' in ui/desktop/src/main.ts:29
Found a known-risky pattern (node_child_process). Review and replace if possible.
ui/desktop/src/main.ts:29 Node child process
medium System graph security security conf 1.00 Insecure pattern 'node_child_process' in ui/desktop/src/utils/dependencyChecker.ts:14
Found a known-risky pattern (node_child_process). Review and replace if possible.
ui/desktop/src/utils/dependencyChecker.ts:14 Node child process
medium System graph security security conf 1.00 Insecure pattern 'node_child_process' in ui/desktop/src/utils/extensionUpdater.ts:16
Found a known-risky pattern (node_child_process). Review and replace if possible.
ui/desktop/src/utils/extensionUpdater.ts:16 Node child process
medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — test_acp_client.py:46
`subprocess.Popen(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.
runtime safetyRobustness
medium System graph quality Placeholder conf 1.00 Placeholder or mock-heavy implementation detected
Found 220 placeholder/mock markers across 83 source files. This often means the repo looks complete while core flows still use generated scaffolding or fake data.
Mock dataIncompleteGenerated repo pattern
low System graph quality Maintenance conf 1.00 33 TODO/FIXME markers
High count of TODO/FIXME/HACK markers — track them as issues so they're not forgotten.
low System graph quality Debug conf 1.00 Debug logging residue appears in source files
Found 226 console/debugger/print-style debug statements in non-test source. This is a common fast-generation residue before production cleanup.
CleanupRepo hardeningGenerated repo pattern
low System graph hardware Supply chain conf 1.00 Docker base image is tag-pinned but not digest-pinned: debian:bookworm-slim
Container tags can be retagged upstream. Pin production base images to a reviewed digest (`image@sha256:...`) when reproducibility and supply-chain integrity matter.
recipe-scanner/Dockerfile:1 containersPinned dependencies
low System graph hardware Supply chain conf 1.00 Docker base image is tag-pinned but not digest-pinned: mcr.microsoft.com/devcontainers/rust:1
Container tags can be retagged upstream. Pin production base images to a reviewed digest (`image@sha256:...`) when reproducibility and supply-chain integrity matter.
.devcontainer/Dockerfile:2 containersPinned dependencies
low System graph hardware Supply chain conf 1.00 Docker base image is tag-pinned but not digest-pinned: rust:1.82-bookworm
Container tags can be retagged upstream. Pin production base images to a reviewed digest (`image@sha256:...`) when reproducibility and supply-chain integrity matter.
Dockerfile:6 containersPinned dependencies
low System graph quality Tests conf 1.00 Low test-to-source ratio
100 tests / 823 src (ratio 0.12).
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `another_unused` in ui/desktop/src/components/workflows/shared/__tests__/WorkflowFormFields.test.tsx:531
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `parsedLegacy` in ui/desktop/src/components/Dashboard/dashboardStorage.ts:125
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `warnOffDeprecated` in ui/desktop/src/preload.ts:8
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph cicd CI/CD security conf 1.00 package.json defines install-time lifecycle scripts
preinstall/install/postinstall/prepare scripts execute during dependency installation. Review them carefully for network calls, obfuscation, shell execution, or credential access.
ui/desktop/package.json CI/CD securitySupply chainNpm
low System graph software Dead code conf 1.00 Possibly dead Python function: handle_request
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
scripts/provider-error-proxy/proxy.py:448
low System graph software Dead code conf 1.00 Possibly dead Python function: stdin_reader
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
scripts/provider-error-proxy/proxy.py:656
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — crates/biorouter-cli/static/script.js:147
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/scripts/build-main.js:41
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/scripts/download-mingit.js:83
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/scripts/fetch-llama-server.js:72
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/scripts/prepare-platform-binaries.js:41
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/scripts/unregister-deeplink-protocols.js:13
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/App.test.tsx:297
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/App.tsx:97
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/components/AnnouncementModal.tsx:97
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/components/ChatInput.tsx:470
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/components/ConfigContext.tsx:116
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/components/ExtensionInstallModal.tsx:163
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/components/MarkdownContent.test.tsx:91
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/components/McpApps/McpAppRenderer.tsx:184
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/components/ModelAndProviderContext.tsx:122
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/components/settings/dictation/ElevenLabsKeyInput.tsx:56
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/components/settings/dictation/VoiceDictationToggle.tsx:48
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/components/settings/extensions/deeplink.ts:177
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/components/settings/extensions/modal/ExtensionModal.tsx:308
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/components/settings/permission/PermissionModal.tsx:98
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/components/settings/sessions/SessionSharingSection.tsx:10
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/components/workflows/shared/__tests__/WorkflowFormFields.test.tsx:33
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/hooks/useChatStream.ts:326
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/hooks/useCostTracking.ts:65
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/hooks/useWorkflowManager.ts:78
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/main.ts:113
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/renderer.tsx:51
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/utils/providerUtils.ts:33
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/src/workflow/index.ts:41
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/tests/e2e/app.spec.ts:45
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/tests/e2e/bioroffice-install.spec.ts:45
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/tests/e2e/bioroffice-verify.spec.ts:107
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/tests/e2e/brxt-spoke-install.spec.ts:30
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph frontend Frontend quality conf 1.00 Stray `console.log` in TS/JS — ui/desktop/tests/e2e/spokeagent-skills.spec.ts:160
Replace with the toast helper, an error boundary, or remove. `console.warn` / `console.error` are acceptable. Why: Hygiene — easy to leak debug output. Rule id: fq.console-leak
Fq console leak
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter-cli/src/cli.rs (1941 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter-cli/src/commands/configure.rs (2174 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter-cli/src/session/mod.rs (1921 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter-mcp/src/autovisualiser/mod.rs (1625 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter-mcp/src/computercontroller/mod.rs (1360 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter-mcp/src/developer/rmcp_developer.rs (3755 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter-mcp/src/knowledge/service.rs (1815 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter-server/src/routes/knowledge.rs (1525 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter-server/tests/knowledge_routes.rs (1824 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter/src/agents/agent.rs (2258 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter/src/agents/code_execution_extension.rs (1320 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter/src/agents/extension_manager.rs (2071 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter/src/config/base.rs (1989 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter/src/providers/formats/databricks.rs (1465 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter/src/providers/formats/google.rs (1544 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter/src/providers/formats/openai.rs (1476 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: crates/biorouter/src/session/session_manager.rs (1635 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: ui/desktop/src/api/types.gen.ts (4360 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: ui/desktop/src/components/ChatInput.tsx (1791 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: ui/desktop/src/main.ts (3609 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
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