https://github.com/tonysu17/reasoning-on-a-manifold
· scanned 2026-06-16 00:40 UTC (2 months, 1 week ago)
47 raw signals (0 security + 47 graph)
Last scanned 2 months, 1 week ago · v1 · 39 actionable findings from 1 signal source. 8 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.
All 948 nodes from the latest scan, grouped by kind. Each node is a unit the engine identified (file, function, endpoint, table…). Most users won't need this view — it's primarily for debugging the engine's graph extraction or for AI agents that want to enumerate the project structure.
| Label | Layer | Status | Path |
|---|---|---|---|
_arm_complete |
software | healthy | build_steering_arms.py:50 |
_print_arm_table |
software | healthy | build_steering_arms.py:54 |
_cross_arm_replication |
software | healthy | build_steering_arms.py:64 |
main |
software | healthy | build_steering_arms.py:82 |
cosine |
software | healthy | 06b_steering_composition.py:56 |
load_steering_vector |
software | healthy | 06b_steering_composition.py:63 |
load_activations |
software | healthy | 06b_steering_composition.py:76 |
project_to_pooled_subspace |
software | healthy | 06b_steering_composition.py:83 |
project_to_tangent_bundle |
software | healthy | 06b_steering_composition.py:93 |
compose_pair |
software | healthy | 06b_steering_composition.py:98 |
main |
software | healthy | 06b_steering_composition.py:137 |
_ser |
software | healthy | 06b_steering_composition.py:206 |
smooth_curve |
software | healthy | compute_layer_triangulation.py:66 |
find_peak_with_plateau |
software | healthy | compute_layer_triangulation.py:77 |
is_curve_flat |
software | healthy | compute_layer_triangulation.py:109 |
triangulate_behaviour |
software | healthy | compute_layer_triangulation.py:124 |
_peak |
software | healthy | compute_layer_triangulation.py:134 |
load_phase5_curves |
software | healthy | compute_layer_triangulation.py:189 |
load_phase5_nulls |
software | healthy | compute_layer_triangulation.py:207 |
holm_bonferroni |
software | healthy | compute_layer_triangulation.py:225 |
load_phase5c_curves |
software | healthy | compute_layer_triangulation.py:273 |
load_phase7b_curves |
software | healthy | compute_layer_triangulation.py:288 |
render_summary_md |
software | healthy | compute_layer_triangulation.py:301 |
plot_curves |
software | healthy | compute_layer_triangulation.py:365 |
main |
software | healthy | compute_layer_triangulation.py:418 |
parse_args |
software | healthy | 11_trajectory_analysis.py:38 |
setup_logging |
software | healthy | 11_trajectory_analysis.py:60 |
_load_summary_df |
software | healthy | 11_trajectory_analysis.py:67 |
_group_comparison_records |
software | healthy | 11_trajectory_analysis.py:78 |
main |
software | healthy | 11_trajectory_analysis.py:132 |
probe_accuracy_at_layer |
software | healthy | 05c_cross_layer_probing.py:57 |
probe_all_layers_all_behaviours |
software | healthy | 05c_cross_layer_probing.py:120 |
pca_subspace |
software | healthy | 05c_cross_layer_probing.py:172 |
principal_angle_mean_deg |
software | healthy | 05c_cross_layer_probing.py:178 |
subspace_angle_evolution |
software | healthy | 05c_cross_layer_probing.py:185 |
main |
software | healthy | 05c_cross_layer_probing.py:225 |
sample_hypersphere |
software | healthy | power_analysis_curvature.py:68 |
sample_flat_disk |
software | healthy | power_analysis_curvature.py:82 |
run_diagnostics |
software | healthy | power_analysis_curvature.py:98 |
compute_power |
software | healthy | power_analysis_curvature.py:143 |
write_csv |
software | healthy | power_analysis_curvature.py:207 |
write_summary |
software | healthy | power_analysis_curvature.py:216 |
make_plot |
software | healthy | power_analysis_curvature.py:262 |
main |
software | healthy | power_analysis_curvature.py:302 |
parse_args |
software | healthy | 12_cbs_ablation.py:42 |
setup_logging |
software | healthy | 12_cbs_ablation.py:73 |
_load_tier_acts |
software | healthy | 12_cbs_ablation.py:80 |
_load_adding_knowledge_centroid |
software | healthy | 12_cbs_ablation.py:123 |
_failstop_template |
software | healthy | 12_cbs_ablation.py:138 |
main |
software | healthy | 12_cbs_ablation.py:167 |
Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.
| Label | Layer | Status | Path |
|---|---|---|---|
build_steering_arms.py |
software | healthy | build_steering_arms.py |
06b_steering_composition.py |
software | healthy | 06b_steering_composition.py |
run_multiannotator_pipeline.sh |
software | healthy | run_multiannotator_pipeline.sh |
compute_layer_triangulation.py |
software | healthy | compute_layer_triangulation.py |
11_trajectory_analysis.py |
software | healthy | 11_trajectory_analysis.py |
build_phase6.py |
software | healthy | build_phase6.py |
05c_cross_layer_probing.py |
software | healthy | 05c_cross_layer_probing.py |
power_analysis_curvature.py |
software | healthy | power_analysis_curvature.py |
12_cbs_ablation.py |
software | healthy | 12_cbs_ablation.py |
02b_generate_baseline_chains.py |
software | healthy | 02b_generate_baseline_chains.py |
validate_pilot_lengths.py |
software | healthy | validate_pilot_lengths.py |
02_generate_chains.py |
software | healthy | 02_generate_chains.py |
skills-lock.json |
software | healthy | skills-lock.json |
verify_base_model.py |
software | healthy | verify_base_model.py |
05_pca_analysis.py |
software | healthy | 05_pca_analysis.py |
07b_activation_patching.py |
software | healthy | 07b_activation_patching.py |
09_cbs_geometry.py |
software | healthy | 09_cbs_geometry.py |
05b_geometric_diagnostics.py |
software | healthy | 05b_geometric_diagnostics.py |
README.md |
software | healthy | README.md |
PROGRESS.md |
software | healthy | PROGRESS.md |
make_fresh_figures.py |
software | healthy | make_fresh_figures.py |
check_chain_quality.py |
software | healthy | check_chain_quality.py |
tier1_geometry_nulls.py |
software | healthy | tier1_geometry_nulls.py |
run_remaining_phases.sh |
software | healthy | run_remaining_phases.sh |
01_generate_tasks.py |
software | healthy | 01_generate_tasks.py |
08_annotate_cbs.py |
software | healthy | 08_annotate_cbs.py |
04_cleanup_tasks.py |
software | healthy | 04_cleanup_tasks.py |
04_extract_activations.py |
software | healthy | 04_extract_activations.py |
CONFOUNDS_AND_REMEDIATION.md |
software | healthy | CONFOUNDS_AND_REMEDIATION.md |
05d_subtype_clustering.py |
software | healthy | 05d_subtype_clustering.py |
run_rerun_local.sh |
software | healthy | run_rerun_local.sh |
06_build_steering.py |
software | healthy | 06_build_steering.py |
predict_saturation.py |
software | healthy | predict_saturation.py |
tier1_effective_n.py |
software | healthy | tier1_effective_n.py |
robustness_geometry.py |
software | healthy | robustness_geometry.py |
compare_annotators.py |
software | healthy | compare_annotators.py |
10_trajectory_build.py |
software | healthy | 10_trajectory_build.py |
AUDIT.md |
software | healthy | AUDIT.md |
07_evaluate_steering.py |
software | healthy | 07_evaluate_steering.py |
pooling_sweep.py |
software | healthy | pooling_sweep.py |
.env.example |
software | healthy | .env.example |
00_pilot_gate.py |
software | healthy | 00_pilot_gate.py |
04b_extract_annotator.py |
software | healthy | 04b_extract_annotator.py |
pyproject.toml |
software | healthy | pyproject.toml |
13_baseline_replication.py |
software | healthy | 13_baseline_replication.py |
render_html.py |
software | healthy | render_html.py |
make_explainer_figs.py |
software | healthy | make_explainer_figs.py |
INVENTORY.md |
software | healthy | INVENTORY.md |
verify_annotation_completeness.py |
software | healthy | verify_annotation_completeness.py |
03_annotate_chains.py |
software | healthy | 03_annotate_chains.py |
Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.
| Label | Layer | Status | Path |
|---|---|---|---|
PowerCell |
software | healthy | power_analysis_curvature.py:131 |
_BatchEncoding |
software | healthy | tests/test_gpt_oss_integration.py:41 |
FakeFastTokenizer |
software | healthy | tests/test_gpt_oss_integration.py:55 |
_Block |
software | healthy | tests/test_gpt_oss_integration.py:85 |
_Inner |
software | healthy | tests/test_gpt_oss_integration.py:94 |
FakeGptOss |
software | healthy | tests/test_gpt_oss_integration.py:101 |
_TmplTok |
software | healthy | tests/test_gpt_oss_integration.py:133 |
_RecTok |
software | healthy | tests/test_gpt_oss_integration.py:138 |
_BrokenTok |
software | healthy | tests/test_gpt_oss_integration.py:150 |
TransformerStyle |
software | healthy | tests/test_gpt_oss_integration.py:217 |
NoLayers |
software | healthy | tests/test_gpt_oss_integration.py:228 |
_GenTokGptOss |
software | healthy | tests/test_gpt_oss_integration.py:339 |
_GenTokDeepseek |
software | healthy | tests/test_gpt_oss_integration.py:350 |
_GenModel |
software | healthy | tests/test_gpt_oss_integration.py:360 |
SteeredModel |
software | healthy | src/steered_inference.py:88 |
PatchResult |
software | healthy | src/activation_patching.py:55 |
NullResult |
software | healthy | src/nulls.py:37 |
IDResult |
software | healthy | src/intrinsic_dim.py:37 |
ActivationCache |
software | healthy | src/hooks.py:21 |
CurvatureResult |
software | healthy | src/curvature.py:39 |
CBSResult |
software | healthy | src/cbs/schemas.py:44 |
CBSAnnotatedSentence |
software | healthy | src/cbs/schemas.py:98 |
ChainTrajectory |
software | healthy | src/cbs/schemas.py:119 |
SonnetClient |
software | healthy | src/cbs/annotation.py:147 |
ProxyClient |
software | healthy | src/cbs/annotation.py:158 |
CBSAblationModel |
software | healthy | src/cbs/ablation.py:161 |
MockSonnetClient |
software | healthy | src/cbs/tests/test_annotation.py:30 |
FakeTokenizer |
software | healthy | src/cbs/tests/test_chain_gen_temperature.py:101 |
Inputs |
software | healthy | src/cbs/tests/test_chain_gen_temperature.py:109 |
FakeModel |
software | healthy | src/cbs/tests/test_chain_gen_temperature.py:120 |
_FakeModel |
software | healthy | src/cbs/tests/test_ablation.py:114 |
| Label | Layer | Status | Path |
|---|---|---|---|
tests |
software | healthy | tests |
results |
software | healthy | results |
supervisor_meeting |
software | healthy | results/supervisor_meeting |
tier1_robustness |
software | healthy | results/tier1_robustness |
R1-1.5B |
software | healthy | results/tier1_robustness/R1-1.5B |
_STALE_pre_fix_20260605 |
software | healthy | results/_STALE_pre_fix_20260605 |
trajectory |
software | healthy | results/_STALE_pre_fix_20260605/trajectory |
R1-1.5B-smoke |
software | healthy | results/_STALE_pre_fix_20260605/trajectory/R1-1.5B-smoke |
layer27 |
software | healthy | results/_STALE_pre_fix_20260605/trajectory/R1-1.5B-smoke/la… |
layer17 |
software | healthy | results/_STALE_pre_fix_20260605/trajectory/R1-1.5B-smoke/la… |
cbs |
software | healthy | results/_STALE_pre_fix_20260605/cbs |
R1-1.5B-smoke |
software | healthy | results/_STALE_pre_fix_20260605/cbs/R1-1.5B-smoke |
cross_model |
software | healthy | results/_STALE_pre_fix_20260605/cbs/cross_model |
R1-1.5B |
software | healthy | results/_STALE_pre_fix_20260605/cbs/R1-1.5B |
quality_reports |
software | healthy | results/quality_reports |
steering_vectors |
software | healthy | results/steering_vectors |
R1-1.5B |
software | healthy | results/steering_vectors/R1-1.5B |
base_model_verification |
software | healthy | results/base_model_verification |
pooling_sweep |
software | healthy | results/pooling_sweep |
R1-1.5B |
software | healthy | results/pooling_sweep/R1-1.5B |
pool_first |
software | healthy | results/pooling_sweep/R1-1.5B/pool_first |
pool_last |
software | healthy | results/pooling_sweep/R1-1.5B/pool_last |
robustness |
software | healthy | results/robustness |
.claude |
software | healthy | .claude |
writeup |
software | healthy | writeup |
src |
software | healthy | src |
cbs |
software | healthy | src/cbs |
tests |
software | healthy | src/cbs/tests |
configs |
software | healthy | configs |
| Label | Layer | Status | Path |
|---|---|---|---|
repobility-clone-s9hdkr0r |
software | healthy | /tmp/repobility-clone-s9hdkr0r |
| Label | Layer | Status | Path |
|---|---|---|---|
gpu (detected) |
hardware | healthy | run_multiannotator_pipeline.sh |
| Label | Layer | Status | Path |
|---|---|---|---|
vps::aws |
hardware | healthy | 03_annotate_chains.py |
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