LernerLab/GuPPy — Repobility public scan

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LernerLab/GuPPy

https://github.com/LernerLab/GuPPy · scanned 2026-06-05 17:54 UTC (4 days, 21 hours ago) · 10 languages

305 raw signals (115 security + 190 graph) 92nd percentile · Python · medium (20-100K LoC) System graph score 89 (lower by 4)

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UNIFIED Repobility · multi-layer engine · AI coders

Complete repo analysis

Last scanned 4 days, 21 hours ago · v2 · 128 actionable findings from 2 signal sources. 57 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

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Security checks

77.8% cov · 80 findings

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Score breakdown â 2026-05-18-v5

Component	Sub-score	Weight	Contribution
`structure_score`	85.0	0.15	12.75
`security_score`	91.0	0.25	22.75
`testing_score`	100.0	0.20	20.00
`documentation_score`	93.0	0.15	13.95
`practices_score`	75.0	0.15	11.25
`code_quality`	39.2	0.10	3.92
Overall		1.00	84.6

Severity distribution — click a segment to filter

Active filters: excluding tests × Reset all

Severity: Critical 0 High 5 Medium 6 Low 67 9-Layer: Software Security Quality Integrity Frontend Hardware Data Network Cicd Source: Security checks 48 System graph 80 Crowd 0 Layer: Quality 95 Security 3 Software 22 Cicd 6 Api 1 Frontend 1

Exclude dismissed / FP Exclude test files

Top 10 actions, ranked by impact × ease. Severity drives impact; tag-based fix-clarity drives ease.

#1

tj-actions/changed-files is tag-pinned instead of SHA-pinned

GapSeverity.HIGH Layer.CICD score 0.375

Why: high severity

.github/workflows/assess-file-changes.yml:30

#2

No auth library detected

GapSeverity.MEDIUM Layer.SECURITY score 0.338

Why: medium severity

#3

GitHub Action is tag-pinned rather than SHA-pinned

GapSeverity.MEDIUM Layer.CICD score 0.225

Why: medium severity

.github/workflows/pr-tests.yml:66

#4

GitHub Action is tag-pinned rather than SHA-pinned

GapSeverity.MEDIUM Layer.CICD score 0.225

Why: medium severity

.github/workflows/run-tests.yml:83

#5

GitHub Action is tag-pinned rather than SHA-pinned

GapSeverity.MEDIUM Layer.CICD score 0.225

Why: medium severity

.github/workflows/auto-publish.yml:34

#6

GitHub Actions workflow grants broad write permissions

GapSeverity.MEDIUM Layer.CICD score 0.225

Why: medium severity

.github/workflows/auto-publish.yml

#7

GitHub Action is tag-pinned rather than SHA-pinned

GapSeverity.MEDIUM Layer.CICD score 0.225

Why: medium severity

.github/workflows/claude.yml:35

#8

GitHub Actions workflow grants broad write permissions

GapSeverity.MEDIUM Layer.CICD score 0.225

Why: medium severity

.github/workflows/claude.yml

#9

Likely N+1 query: `for neurodata_object in …` triggers a query per row — src/guppy/extractors/nwb_recording_extractor.py:164

GapSeverity.MEDIUM Layer.QUALITY score 0.225

Why: medium severity · crashes are likely without this

Fix: Add a `timeout=N` argument and wrap in `try/except` in src/guppy/extractors/nwb_recording_extractor.py:164 to prevent hung calls.

src/guppy/extractors/nwb_recording_extractor.py:164

#10

Possibly dead Python function: consistent_timing_trial

GapSeverity.LOW Layer.SOFTWARE score 0.140

Why: low severity · clean removal is a safe PR

Fix: If genuinely unused, remove the function in docs/scripts/cross_correlation_explainer.py:275; if framework-registered, add a docstring.

docs/scripts/cross_correlation_explainer.py:275

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