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aevum-orrin/ML-microbe

https://github.com/aevum-orrin/ML-microbe · scanned 2026-06-17 01:29 UTC (1 month, 2 weeks ago)

11 raw signals (0 security + 11 graph)

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Complete repo analysis

Last scanned 1 month, 2 weeks ago · v2 · last Δ -15.0 (diff) · 11 actionable findings from 1 signal source. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

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Combined
61.7
/100
Security checks
62
0 findings
System graph
62
33.3% cov · 11 findings
Critical
0
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Agents
10
0 votes
Crowd
0
reported
Severity distribution — click a segment to filter
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Severity: Critical 0 High 0 Medium 4 Low 7 9-Layer: Software Security Quality Integrity Frontend Hardware Data Network Cicd Source: Security checks 0 System graph 11 Crowd 0 Layer: Software 4 Security 1 Quality 6

All 56 nodes from the latest scan, grouped by kind. Each node is a unit the engine identified (file, function, endpoint, table…). Most users won't need this view — it's primarily for debugging the engine's graph extraction or for AI agents that want to enumerate the project structure.

LabelLayerStatusPath
test_metadata_shape software healthy tests/test_data_loading.py:24
test_sample_ids_consistent_across_files software healthy tests/test_data_loading.py:29
test_abundance_columns_sum_to_100 software healthy tests/test_data_loading.py:36
test_labelled_sample_count software healthy tests/test_data_loading.py:42
test_no_missing_targets_after_build software healthy tests/test_data_loading.py:48
_stats software healthy scripts/profile_data.py:28
main software healthy scripts/profile_data.py:40
main software healthy scripts/run_demo.py:21
_parser software healthy src/ml_microbe/cli.py:17
main software healthy src/ml_microbe/cli.py:28
run software healthy src/ml_microbe/pipeline.py:13
available_models software healthy src/ml_microbe/modeling.py:35
make_model software healthy src/ml_microbe/modeling.py:39
filter_by_prevalence software healthy src/ml_microbe/features.py:15
clr_transform software healthy src/ml_microbe/features.py:25
log_transform software healthy src/ml_microbe/features.py:37
build_orf_features software dead src/ml_microbe/features.py:42
build_kmer_features software dead src/ml_microbe/features.py:52
summary software healthy src/ml_microbe/evaluation.py:36
loo_cv software healthy src/ml_microbe/evaluation.py:46
n_samples software healthy src/ml_microbe/preprocessing.py:26
n_features software healthy src/ml_microbe/preprocessing.py:30
build_dataset software healthy src/ml_microbe/preprocessing.py:34
load_metadata software healthy src/ml_microbe/data_loading.py:16
load_abundance_wide software healthy src/ml_microbe/data_loading.py:21
load_long software dead src/ml_microbe/data_loading.py:31
load_16s_taxonomy software healthy src/ml_microbe/data_loading.py:37
available_paths software dead src/ml_microbe/data_loading.py:42

LabelLayerStatusPath
CLAUDE.md software healthy CLAUDE.md
requirements.txt software healthy requirements.txt
README.md software healthy README.md
pyproject.toml software healthy pyproject.toml
requirements-dev.txt software healthy requirements-dev.txt
test_data_loading.py software healthy tests/test_data_loading.py
profile_data.py software healthy scripts/profile_data.py
run_demo.py software healthy scripts/run_demo.py
cli.py software healthy src/ml_microbe/cli.py
pipeline.py software healthy src/ml_microbe/pipeline.py
modeling.py software healthy src/ml_microbe/modeling.py
__init__.py software healthy src/ml_microbe/__init__.py
config.py software healthy src/ml_microbe/config.py
features.py software healthy src/ml_microbe/features.py
evaluation.py software healthy src/ml_microbe/evaluation.py
preprocessing.py software healthy src/ml_microbe/preprocessing.py
data_loading.py software healthy src/ml_microbe/data_loading.py
data_analysis.md software healthy docs/data_analysis.md
domain_primer.md software healthy docs/domain_primer.md
CLAUDE.md quality healthy CLAUDE.md

LabelLayerStatusPath
tests software healthy tests
scripts software healthy scripts
src software healthy src
ml_microbe software healthy src/ml_microbe
docs software healthy docs

LabelLayerStatusPath
CVResult software healthy src/ml_microbe/evaluation.py:23
Dataset software healthy src/ml_microbe/preprocessing.py:17

LabelLayerStatusPath
aevum-orrin__ML-microbe software healthy /data/fable5_failed_archive/aevum-orrin__ML-microbe
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