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aristoteleo/PantheonOS

https://github.com/aristoteleo/PantheonOS · scanned 2026-06-17 01:36 UTC (1 month, 2 weeks ago)

169 raw signals (0 security + 169 graph)

UNIFIED Repobility · multi-layer engine · AI coders

Complete repo analysis

Last scanned 1 month, 2 weeks ago · v2 · last Δ -28.9 (diff) · 131 actionable findings from 1 signal source. 38 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

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All 8304 nodes from the latest scan, grouped by kind. Each node is a unit the engine identified (file, function, endpoint, table…). Most users won't need this view — it's primarily for debugging the engine's graph extraction or for AI agents that want to enumerate the project structure.

LabelLayerStatusPath
test_setup_wizard_imports_without_custom_endpoint_types software healthy tests/test_setup_wizard.py:4
test_check_and_run_setup_skips_when_openai_fallback_is_conf… software healthy tests/test_setup_wizard.py:12
test_check_and_run_setup_skips_when_legacy_custom_openai_is… software healthy tests/test_setup_wizard.py:25
__init__ software healthy tests/test_toolset_auto_wrap.py:111
greet software healthy tests/test_toolset_auto_wrap.py:17
calculate software healthy tests/test_toolset_auto_wrap.py:29
test_toolset_auto_wrapped_in_local_provider software healthy tests/test_toolset_auto_wrap.py:43
test_toolset_auto_wrap_initializes_provider software healthy tests/test_toolset_auto_wrap.py:63
test_toolset_auto_wrap_tools_available software healthy tests/test_toolset_auto_wrap.py:81
test_toolset_and_provider_both_work software healthy tests/test_toolset_auto_wrap.py:106
ping software healthy tests/test_toolset_auto_wrap.py:115
test_direct_provider_call_after_auto_wrap software healthy tests/test_toolset_auto_wrap.py:150
test_glm_5_1_model_exists software healthy tests/test_glm_5_1_support.py:7
test_glm_5_1_model_specs software healthy tests/test_glm_5_1_support.py:14
test_glm_5_deprecated software healthy tests/test_glm_5_1_support.py:35
test_glm_5_updated_specs software healthy tests/test_glm_5_1_support.py:45
test_zai_provider_config software healthy tests/test_glm_5_1_support.py:55
test_glm_5_1_provider_detection software healthy tests/test_glm_5_1_support.py:68
test_glm_5_1_model_call software healthy tests/test_glm_5_1_support.py:86
acompletion software healthy tests/test_glm_5_1_support.py:94
_make_manager software healthy tests/test_template_manager.py:9
test_validate_template_dict_with_inline_agents software healthy tests/test_template_manager.py:13
test_template_file_crud_roundtrip software healthy tests/test_template_manager.py:45
test_list_template_files_summary_returns_lightweight_team_m… software healthy tests/test_template_manager.py:85
test_single_cell_team_includes_fm_router software healthy tests/test_template_manager.py:135
test_graph_maker_team_and_dedicated_agents_are_not_factory_… software healthy tests/test_template_manager.py:143
test_multiple_function_calls_get_distinct_indices software healthy tests/test_gemini_cli_adapter_parsing.py:21
test_single_function_call_still_has_index_zero software healthy tests/test_gemini_cli_adapter_parsing.py:40
test_builder_keeps_parallel_tool_calls_separate software healthy tests/test_gemini_cli_adapter_parsing.py:56
test_text_only_response_has_no_tool_calls software healthy tests/test_gemini_cli_adapter_parsing.py:87
test_parallel_tool_responses_coalesce_into_one_user_content software healthy tests/test_gemini_cli_adapter_parsing.py:106
test_single_tool_response_still_emits_single_user_content software healthy tests/test_gemini_cli_adapter_parsing.py:148
test_tool_messages_at_end_still_get_flushed software healthy tests/test_gemini_cli_adapter_parsing.py:166
_make_chatroom software healthy tests/test_chatroom_create_chat_config.py:11
test_model_parameters_are_appended_to_existing_tool_signatu… software healthy tests/test_chatroom_create_chat_config.py:21
test_create_chat_can_initialize_template_workspace_and_chat… software healthy tests/test_chatroom_create_chat_config.py:48
test_create_chat_applies_model_after_template_id_resolution software healthy tests/test_chatroom_create_chat_config.py:125
test_setup_team_for_chat_can_update_only_saved_template_mod… software healthy tests/test_chatroom_create_chat_config.py:147
test_setup_team_for_chat_can_apply_template_id_directly software healthy tests/test_chatroom_create_chat_config.py:195
test_create_chat_validates_model_by_default_before_creating… software healthy tests/test_chatroom_create_chat_config.py:217
test_setup_team_for_chat_validates_model_by_default_without… software healthy tests/test_chatroom_create_chat_config.py:242
test_create_chat_rejects_invalid_template_before_creating_m… software healthy tests/test_chatroom_create_chat_config.py:288
temp_toolset software healthy tests/test_code_toolset.py:25
python_file software healthy tests/test_code_toolset.py:32
js_file software healthy tests/test_code_toolset.py:68
test_python_outline software healthy tests/test_code_toolset.py:96
test_javascript_outline software healthy tests/test_code_toolset.py:116
test_unsupported_file software healthy tests/test_code_toolset.py:129
test_nonexistent_file software healthy tests/test_code_toolset.py:139
test_get_class software healthy tests/test_code_toolset.py:150

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

LabelLayerStatusPath
.readthedocs.yaml software healthy .readthedocs.yaml
README.md software healthy README.md
pyproject.toml software healthy pyproject.toml
LICENSE software healthy LICENSE
.env.test software healthy .env.test
runtime_hook_tiktoken.py software healthy runtime_hook_tiktoken.py
test_setup_wizard.py software healthy tests/test_setup_wizard.py
test_toolset_auto_wrap.py software healthy tests/test_toolset_auto_wrap.py
test_glm_5_1_support.py software healthy tests/test_glm_5_1_support.py
test_template_manager.py software healthy tests/test_template_manager.py
test_gemini_cli_adapter_parsing.py software healthy tests/test_gemini_cli_adapter_parsing.py
test_chatroom_create_chat_config.py software healthy tests/test_chatroom_create_chat_config.py
test_code_toolset.py software healthy tests/test_code_toolset.py
test_image_detection.py software healthy tests/test_image_detection.py
test_apply_patch.py software healthy tests/test_apply_patch.py
test_conversation_recovery.py software healthy tests/test_conversation_recovery.py
conftest.py software healthy tests/conftest.py
test_knowledge_toolset_visibility.py software healthy tests/test_knowledge_toolset_visibility.py
test_system_prompt.py software healthy tests/test_system_prompt.py
test_responses_api.py software healthy tests/test_responses_api.py
test_image_generation.py software healthy tests/test_image_generation.py
test_oauth_split_flow.py software healthy tests/test_oauth_split_flow.py
test_startup_defaults.py software healthy tests/test_startup_defaults.py
test_memory_properties.py software healthy tests/test_memory_properties.py
test_context_isolation.py software healthy tests/test_context_isolation.py
test_llm_base_resolution.py software healthy tests/test_llm_base_resolution.py
test_integration_memory_learning.py software healthy tests/test_integration_memory_learning.py
test_chatname.py software healthy tests/test_chatname.py
test_r_notebook.py software healthy tests/test_r_notebook.py
test_remote_agent.py software healthy tests/test_remote_agent.py
test_scfm_router_integration.py software healthy tests/test_scfm_router_integration.py
test_knowledge.py software healthy tests/test_knowledge.py
test_model_selector.py software healthy tests/test_model_selector.py
test_provider_adapters.py software healthy tests/test_provider_adapters.py
test_unified_mcp.py software healthy tests/test_unified_mcp.py
test_scfm.py software healthy tests/test_scfm.py
test_gemini_image_output.py software healthy tests/test_gemini_image_output.py
test_compression.py software healthy tests/test_compression.py
test_notebook_concurrency.py software healthy tests/test_notebook_concurrency.py
test_task_renderers.py software healthy tests/test_task_renderers.py
test_chatroom_memory_e2e.py software healthy tests/test_chatroom_memory_e2e.py
test_nats_streaming.py software healthy tests/test_nats_streaming.py
test_think_backcompat.py software healthy tests/test_think_backcompat.py
test_plugin_registry.py software healthy tests/test_plugin_registry.py
test_llm_provider_config.py software healthy tests/test_llm_provider_config.py
test_chatroom_saved_models.py software healthy tests/test_chatroom_saved_models.py
test_storage.py software healthy tests/test_storage.py
test_gemini_adapter_base_url.py software healthy tests/test_gemini_adapter_base_url.py
test_smart_func.py software healthy tests/test_smart_func.py
test_chatroom_api_key_status.py software healthy tests/test_chatroom_api_key_status.py

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

LabelLayerStatusPath
SampleToolSet software healthy tests/test_toolset_auto_wrap.py:10
AnotherToolSet software healthy tests/test_toolset_auto_wrap.py:110
DummyAdapter software healthy tests/test_glm_5_1_support.py:93
TestViewFileOutline software healthy tests/test_code_toolset.py:93
TestViewCodeItem software healthy tests/test_code_toolset.py:147
TestSnapshotImages software healthy tests/test_image_detection.py:25
TestDiffSnapshots software healthy tests/test_image_detection.py:67
TestEncodeImagesToUris software healthy tests/test_image_detection.py:102
TestGetImageLimits software healthy tests/test_image_detection.py:159
TestSnapshotDiffEncodeRoundTrip software healthy tests/test_image_detection.py:178
TestSubstituteTemplateVars software healthy tests/test_system_prompt.py:15
TestAppendContextBlocks software healthy tests/test_system_prompt.py:45
TestRenderSystemPrompt software healthy tests/test_system_prompt.py:92
TestIsResponsesApiModel software healthy tests/test_responses_api.py:28
TestConvertMessagesToResponsesInput software healthy tests/test_responses_api.py:62
TestConvertToolsForResponses software healthy tests/test_responses_api.py:216
TestConvertModelParamsForResponses software healthy tests/test_responses_api.py:281
TestResponsesApiRealCalls software healthy tests/test_responses_api.py:336
TestAgentRunWithCodex software healthy tests/test_responses_api.py:518
TestDefaultResponsesAPIRouting software healthy tests/test_responses_api.py:648
TestToolSetBasics software healthy tests/test_image_generation.py:57
FakeAdapter software healthy tests/test_image_generation.py:518
FakeLogger software healthy tests/test_image_generation.py:505
TestGeminiGeneration software healthy tests/test_image_generation.py:552
TestDallEGeneration software healthy tests/test_image_generation.py:595
FakeSettings software healthy tests/test_startup_defaults.py:177
FakeGateway software healthy tests/test_startup_defaults.py:181
FakeMCPManager software healthy tests/test_startup_defaults.py:187
FakeToolSetManager software healthy tests/test_startup_defaults.py:202
FakeMCP software healthy tests/test_startup_defaults.py:253
TestMemoryPathProperties software healthy tests/test_memory_properties.py:15
TestMemoryMetadataHelpers software healthy tests/test_memory_properties.py:196
DummyAdapter software healthy tests/test_llm_base_resolution.py:136
LogCapture software healthy tests/test_integration_memory_learning.py:107
TestMemorySystemIntegration software healthy tests/test_integration_memory_learning.py:137
TestLearningSystemIntegration software healthy tests/test_integration_memory_learning.py:227
TestPluginHooks software healthy tests/test_integration_memory_learning.py:317
TestPluginGetToolsets software healthy tests/test_integration_memory_learning.py:542
SelectivePlugin software healthy tests/test_integration_memory_learning.py:579
TestCompressionMemoryIntegration software healthy tests/test_integration_memory_learning.py:605
TestHierarchicalSkills software healthy tests/test_integration_memory_learning.py:793
TestSessionNoteMetadata software healthy tests/test_integration_memory_learning.py:983
TestRpy2Initialization software healthy tests/test_r_notebook.py:43
TestRCodeExecution software healthy tests/test_r_notebook.py:96
TestKernelRestartResetRpy2 software healthy tests/test_r_notebook.py:150
TestRMagicDetection software healthy tests/test_r_notebook.py:183
TestSCFMRouterIntegration software healthy tests/test_scfm_router_integration.py:22
TestSCFMRouterDataProfiling software healthy tests/test_scfm_router_integration.py:239
TestSCFMRouterExecutionPlan software healthy tests/test_scfm_router_integration.py:304
TestSCFMRouterWithEmbeddings software healthy tests/test_scfm_router_integration.py:384

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

LabelLayerStatusPath
tests software healthy tests
test_memory_system software healthy tests/test_memory_system
test_learning_system software healthy tests/test_learning_system
test_task_system software healthy tests/test_task_system
scripts software healthy scripts
.github software healthy .github
workflows software healthy .github/workflows
examples software healthy examples
single_cell_spatial_analysis software healthy examples/single_cell_spatial_analysis
agents software healthy examples/single_cell_spatial_analysis/agents
analysis-skills software healthy examples/single_cell_spatial_analysis/analysis-skills
cases software healthy examples/single_cell_spatial_analysis/cases
pbmc3k software healthy examples/single_cell_spatial_analysis/cases/pbmc3k
mouse_embryo_e9.5 software healthy examples/single_cell_spatial_analysis/cases/mouse_embryo_e9…
stero_seq_embryo software healthy examples/single_cell_spatial_analysis/cases/stero_seq_embryo
gene_panel_selection_immune software healthy examples/single_cell_spatial_analysis/cases/gene_panel_sele…
als_motor_cortex software healthy examples/single_cell_spatial_analysis/cases/als_motor_cortex
chd_heart_spatial software healthy examples/single_cell_spatial_analysis/cases/chd_heart_spati…
detailed_prompts software healthy examples/single_cell_spatial_analysis/cases/chd_heart_spati…
evolution_batch_correction software healthy examples/evolution_batch_correction
evolution_harmonypy software healthy examples/evolution_batch_correction/evolution_harmonypy
results software healthy examples/evolution_batch_correction/evolution_harmonypy/res…
evolution_scanorama software healthy examples/evolution_batch_correction/evolution_scanorama
scanorama software healthy examples/evolution_batch_correction/evolution_scanorama/sca…
results software healthy examples/evolution_batch_correction/evolution_scanorama/res…
scanorama_optimized software healthy examples/evolution_batch_correction/evolution_scanorama/res…
evolution_bbknn software healthy examples/evolution_batch_correction/evolution_bbknn
results software healthy examples/evolution_batch_correction/evolution_bbknn/results
bbknn_balanced software healthy examples/evolution_batch_correction/evolution_bbknn/results…
bbknn_fast software healthy examples/evolution_batch_correction/evolution_bbknn/results…
bbknn_similar_speed software healthy examples/evolution_batch_correction/evolution_bbknn/results…
bbknn_optimized software healthy examples/evolution_batch_correction/evolution_bbknn/results…
bbknn software healthy examples/evolution_batch_correction/evolution_bbknn/bbknn
evolution_topact software healthy examples/evolution_topact
topact software healthy examples/evolution_topact/topact
results software healthy examples/evolution_topact/results
topact_optimized software healthy examples/evolution_topact/results/topact_optimized
topact software healthy examples/evolution_topact/results/topact_optimized/topact
programs software healthy examples/evolution_topact/results/programs
paper_reporter_v2 software healthy examples/paper_reporter_v2
evolution_gene_panel software healthy examples/evolution_gene_panel
scripts software healthy examples/evolution_gene_panel/scripts
results_explore_primary software healthy examples/evolution_gene_panel/results_explore_primary
results_optimize_primary software healthy examples/evolution_gene_panel/results_optimize_primary
fastq_processing software healthy examples/fastq_processing
upstream_skills software healthy examples/fastq_processing/upstream_skills
code_distillation software healthy examples/code_distillation
results software healthy examples/code_distillation/results
paper_reporter software healthy examples/paper_reporter
executor software healthy executor

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

LabelLayerStatusPath
auth::tests/test_chatroom_memory_e2e.py security healthy tests/test_chatroom_memory_e2e.py
auth::pantheon/utils/vision_capability.py security healthy pantheon/utils/vision_capability.py
auth::pantheon/utils/adapters/gemini_cli_adapter.py security healthy pantheon/utils/adapters/gemini_cli_adapter.py
auth::pantheon/utils/adapters/codex_adapter.py security healthy pantheon/utils/adapters/codex_adapter.py
auth::tests/test_oauth_split_flow.py security healthy tests/test_oauth_split_flow.py
auth::pantheon/utils/model_selector.py security healthy pantheon/utils/model_selector.py
auth::pantheon/store/auth.py security healthy pantheon/store/auth.py
auth::pantheon/remote/factory.py security healthy pantheon/remote/factory.py
auth::tests/test_gemini_oauth.py security healthy tests/test_gemini_oauth.py
auth::pantheon/utils/oauth/__init__.py security healthy pantheon/utils/oauth/__init__.py
auth::pantheon/chatroom/__main__.py security healthy pantheon/chatroom/__main__.py
auth::pantheon/chatroom/room.py security healthy pantheon/chatroom/room.py
auth::pantheon/agent.py security healthy pantheon/agent.py
auth::pantheon/utils/llm_catalog.json security healthy pantheon/utils/llm_catalog.json
auth::pantheon/utils/oauth/codex.py security healthy pantheon/utils/oauth/codex.py
auth::tests/test_llm_provider_config.py security healthy tests/test_llm_provider_config.py
auth::pantheon/utils/llm.py security healthy pantheon/utils/llm.py
auth::pantheon/settings.py security healthy pantheon/settings.py
auth::pantheon/utils/llm_providers.py security healthy pantheon/utils/llm_providers.py
auth::tests/test_tool_result_vision.py security healthy tests/test_tool_result_vision.py
auth::pantheon/toolsets/task/task_toolset.py security healthy pantheon/toolsets/task/task_toolset.py
auth::tests/test_responses_api.py security healthy tests/test_responses_api.py
auth::pantheon/utils/oauth/gemini.py security healthy pantheon/utils/oauth/gemini.py

LabelLayerStatusPath
port:8080 network healthy README.md
port:3100 network healthy tests/test_startup_defaults.py
port:3300 network healthy tests/test_unified_mcp.py
port:3310 network healthy tests/test_unified_mcp.py
port:3320 network healthy tests/test_unified_mcp.py
port:3330 network healthy tests/test_unified_mcp.py
port:4222 network healthy tests/test_nats_streaming.py
port:8222 network healthy .github/workflows/test.yml
port:127 network healthy pantheon/toolsets/live_view/data_server.py
port:9000 network healthy docker/README.md

LabelLayerStatusPath
mysql data healthy tests/test_chatroom_memory_e2e.py
elasticsearch data healthy tests/test_chatroom_memory_e2e.py
clickhouse data healthy tests/test_chatroom_memory_e2e.py
postgresql data healthy tests/test_chatroom_memory_e2e.py
postgres data healthy pantheon/toolsets/task/task_toolset.py
mongodb data healthy pantheon/toolsets/task/task_toolset.py
sqlite data healthy pantheon/factory/templates/skills/rare_disease/SKILL.md

LabelLayerStatusPath
diseases data healthy pantheon/factory/templates/skills/rare_disease/scripts/buil…
disease_aliases data healthy pantheon/factory/templates/skills/rare_disease/scripts/buil…
disease_xrefs data healthy pantheon/factory/templates/skills/rare_disease/scripts/buil…
hpo_terms data healthy pantheon/factory/templates/skills/rare_disease/scripts/buil…
phenotype_assoc data healthy pantheon/factory/templates/skills/rare_disease/scripts/buil…
gene_assoc data healthy pantheon/factory/templates/skills/rare_disease/scripts/buil…
source_meta data healthy pantheon/factory/templates/skills/rare_disease/scripts/buil…

LabelLayerStatusPath
BUILD_CONTEXT cicd healthy
PYPI_APITOKEN cicd healthy
DOCKERFILE_PATH cicd healthy
DOCKERHUB_USERNAME cicd healthy
DOCKERHUB_TOKEN cicd healthy
OPENAI_API_KEY cicd healthy
DOCKER_IMAGE cicd healthy

LabelLayerStatusPath
127.0.0.1 network healthy .env.test
5.15.153.1 network healthy tests/test_chatroom_start.py
120.0.0.0 network healthy pantheon/toolsets/web_urllib.py
3.2.1.23 network healthy pantheon/toolsets/database_api/schemas/uniprot.json
192.168.1.100 network healthy docker/README.md

LabelLayerStatusPath
gha::test cicd healthy .github/workflows/test.yml
gha::promote-agent cicd healthy .github/workflows/promote-agent.yml
gha::publish_pypi cicd healthy .github/workflows/publish_pypi.yml
gha::docker-build cicd healthy .github/workflows/docker-build.yml

LabelLayerStatusPath
test cicd healthy .github/workflows/test.yml
promote cicd healthy .github/workflows/promote-agent.yml
deploy cicd healthy .github/workflows/publish_pypi.yml
build-and-push cicd healthy .github/workflows/docker-build.yml

LabelLayerStatusPath
vps::azure hardware healthy tests/test_integration_memory_learning.py
vps::aws hardware healthy tests/test_chatroom_memory_e2e.py

LabelLayerStatusPath
aristoteleo__PantheonOS software healthy /data/fable5_failed_archive/aristoteleo__PantheonOS

LabelLayerStatusPath
kafka data healthy tests/test_chatroom_memory_e2e.py

LabelLayerStatusPath
nginx network healthy pantheon/toolsets/file_transfer/worker.py

LabelLayerStatusPath
image::docker/Dockerfile hardware healthy docker/Dockerfile

LabelLayerStatusPath
gpu (detected) hardware healthy tests/test_scfm.py

LabelLayerStatusPath
dotenv::.env.test security healthy .env.test
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