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Issue title

Duplicated implementation block across source files

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Top 5 (default)
Severity Rule Title File:line
HIGH SEC018 [SEC018] AI-Agent Secret Retrieval Command: A command that prints or embeds credentials w… scripts/codex/merge-mcp-config.js:70
HIGH SEC020 [SEC020] Secret Printed to Logs: Debug or diagnostic code appears to print a credential-b… scripts/claw.js:430
MED ERR001 [ERR001] Silent Exception Swallowing: Silently swallowing all exceptions hides bugs. Even… skills/continuous-learning-v2/scripts/i…:35
MED AIC003 Duplicated implementation block across source files scripts/install-plan.js:103
MED AIC003 Duplicated implementation block across source files scripts/hooks/session-end-marker.js:39
MED AIC003 Duplicated implementation block across source files scripts/hooks/run-with-flags.js:12
MED AIC003 Duplicated implementation block across source files scripts/hooks/run-with-flags.js:11
MED AIC003 Duplicated implementation block across source files scripts/hooks/pre-bash-tmux-reminder.js:19
MED AIC003 Duplicated implementation block across source files scripts/hooks/pre-bash-tmux-reminder.js:18
MED AIC003 Duplicated implementation block across source files scripts/hooks/pre-bash-git-push-reminde…:15
MED AIC003 Duplicated implementation block across source files scripts/hooks/post-edit-accumulator.js:28
MED AIC003 Duplicated implementation block across source files scripts/hooks/post-bash-pr-created.js:24
MED AIC003 Duplicated implementation block across source files scripts/hooks/plugin-hook-bootstrap.js:26
MED AIC003 Duplicated implementation block across source files scripts/hooks/mcp-health-check.js:75
MED AIC003 Duplicated implementation block across source files .codebuddy/uninstall.js:71
LOW AIC009 Multiple AI-agent scaffold marker files are present .github/copilot-instructions.md:1
LOW AIC002 Source file name looks like an AI patch artifact scripts/auto-update.js:1
Reset to top 5 17 findings available (after auto-suppression of test files + won't-fix)

Issue body (markdown)

## Code-quality scan: `affaan-m/everything-claude-code`

**Score: 78/100 (A-)**  ·  21 findings  ·  scanned 2026-05-16 01:56 UTC  ·  154,133 LOC

| Severity | Count |
|---|---|
| CRITICAL | 0 |
| HIGH | 2 |
| MEDIUM | 13 |
| LOW | 2 |

📊 [Full filterable report](https://repobility.com/scan/92ec4de5-55f6-4920-b255-5b8cbcf52ded/)  ·  ![scorecard](https://repobility.com/scan/92ec4de5-55f6-4920-b255-5b8cbcf52ded/report.png?v=1778896615-s2)

### Top findings

1. **HIGH** `SEC018` — AI-Agent Secret Retrieval Command
   `scripts/codex/merge-mcp-config.js:70` · A07:2021 Identification & Authentication Failures
2. **HIGH** `SEC020` — Secret Printed to Logs
   `scripts/claw.js:430` · A07:2021 Identification & Authentication Failures
3. **MEDIUM** `ERR001` — Silent Exception Swallowing
   `skills/continuous-learning-v2/scripts/instinct-cli.py:35`
4. **MEDIUM** `AIC003` — Duplicated implementation block across source files
   `scripts/install-plan.js:103`
5. **MEDIUM** `AIC003` — Duplicated implementation block across source files
   `scripts/hooks/session-end-marker.js:39`

---

**Security note**: this issue is public. If any flagged finding is a real, exploitable vulnerability, please redirect to your `SECURITY.md` policy or open a [private security advisory](https://docs.github.com/en/code-security/security-advisories/guidance-on-reporting-and-writing-information-about-vulnerabilities/privately-reporting-a-security-vulnerability) instead. We're happy to close this and re-submit privately.

---

_Filed automatically. Close this issue if not useful — we won't refile. Full report: https://repobility.com/scan/92ec4de5-55f6-4920-b255-5b8cbcf52ded/_
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This repo publishes a SECURITY.md policy and the scan contains 2 Critical/High security finding(s). Public issue filing would violate coordinated disclosure. Submit privately via the project's security reporting channel.
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