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ThomasLiii/PySelfCal

https://github.com/ThomasLiii/PySelfCal · scanned 2026-06-16 00:35 UTC (2 months, 2 weeks ago)

95 raw signals (0 security + 95 graph)

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UNIFIED Repobility · multi-layer engine · AI coders

Complete repo analysis

Last scanned 2 months, 2 weeks ago · v1 · 60 actionable findings from 1 signal source. 35 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

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Combined
86.1
/100
Security checks
86
0 findings
System graph
86
77.8% cov · 60 findings
Critical
0
click to filter
Agents
10
0 votes
Crowd
0
reported
Severity distribution — click a segment to filter
Active filters: excluding tests × Reset all
Severity: Critical 0 High 0 Medium 5 Low 37 9-Layer: Software Security Quality Integrity Frontend Hardware Data Network Cicd Source: Security checks 0 System graph 60 Crowd 0 Layer: Software 7 Frontend 1 Security 1 Cicd 1 Quality 50
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Scan summary Repository scanned at 86.1/100 with 77.8% coverage. It contains 666 nodes across 0 cross-layer flows, written primarily in mixed languages. Engine surfaced 95 findings — concentrated in quality (62), software (30), frontend (1). Risk profile is low: 0 critical, 0 high, 5 medium. Recommended next step: open the quality layer findings first — that's where the highest-impact wins live.

Showing 42 of 60 actionable findings. 95 raw detector signals were grouped into reader-sized issues. Click TP / FP to vote on a finding's accuracy — votes adjust the confidence weighting and improve detection across the platform.

medium System graph quality Agent instructions conf 1.00 Agent instructions exist but release-hardening basics are missing
AI-coder instruction files were found, but the repo is missing license, ci. Treat this as a contract gap: the agent is guided, but the generated output is not yet guarded by the controls that make it repeatable.
Repo hardeningGenerated repo pattern
medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — selfcal_scripts/benchmarks/bench_e2e.py:207
`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.
runtime safetyRobustness
medium System graph security Coverage conf 1.00 No auth library detected
The scanner did not find any standard auth library (JWT, OAuth, NextAuth, Auth0, etc.). The repo has auth/admin/session surface indicators, so auth may live in custom code, in a separate service, or be missing.
auth
medium System graph cicd CI/CD security conf 1.00 No CI/CD pipelines detected
No GitHub Actions, GitLab CI, or CircleCI configs found. Without CI you can't gate deploys on tests/lints.
CI/CD securityCoverage
medium System graph quality Tests conf 1.00 Very low test-to-source ratio
1 test file(s) for 75 source file(s) (ratio 0.01). Consider adding integration or unit tests for critical paths.
Coverage
low System graph quality Production readiness conf 1.00 Composite production-readiness gap
Multiple low-cost hardening controls are missing together: license, ci. Opus verification showed these co-occurring gaps are a better readiness signal than reading each flag in isolation.
Repo hardeningGenerated repo pattern
low System graph quality Debug conf 1.00 Debug logging residue appears in source files
Found 708 console/debugger/print-style debug statements in non-test source. This is a common fast-generation residue before production cleanup.
CleanupRepo hardeningGenerated repo pattern
low System graph quality Integrity conf 1.00 3 occurrences Near-duplicate function bodies in 10 places
Functions with the same first-5-line body hash: selfcal_scripts/benchmarks/run_cal_baseline_test.py:prepare_channel_inputs, selfcal_scripts/drivers/run_cal.py:prepare_channel_inputs, selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_SE.py:prepare_channel_inputs, selfcal_scripts/drivers/chunked_NEP/ru…
3 occurrences
repo-level (3 hits)
duplicatesduplication
low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 11 places
Functions with the same first-5-line body hash: selfcal_scripts/benchmarks/run_cal_baseline_test.py:prepare_detector_inputs, selfcal_scripts/benchmarks/benchmark_d3_ch17_stable.py:prepare_detector_inputs, selfcal_scripts/drivers/run_cal.py:prepare_detector_inputs, selfcal_scripts/drivers/chunked_NE…
duplicatesduplication
low System graph quality Integrity conf 1.00 8 occurrences Near-duplicate function bodies in 2 places
Functions with the same first-5-line body hash: selfcal_scripts/benchmarks/benchmark_d3_ch17_mid.py:main, selfcal_scripts/benchmarks/benchmark_d3_ch17_stable.py:main This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn/ai-code-hygiene). Consolidate or do…
8 occurrences
repo-level (8 hits)
duplicatesduplication
low System graph quality Integrity conf 1.00 2 occurrences Near-duplicate function bodies in 3 places
Functions with the same first-5-line body hash: selfcal_scripts/benchmarks/profile_interior.py:work, selfcal_scripts/benchmarks/profile_interior.py:work, selfcal_scripts/benchmarks/profile_interior.py:work This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://j…
2 occurrences
repo-level (2 hits)
duplicatesduplication
low System graph quality Integrity conf 1.00 2 occurrences Near-duplicate function bodies in 4 places
Functions with the same first-5-line body hash: selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_SE.py:load_frame_list, selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_NE.py:load_frame_list, selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_NW.py:load_frame_list, selfcal_scripts/drivers/chunked_NEP/ru…
2 occurrences
repo-level (2 hits)
duplicatesduplication
low System graph quality Integrity conf 1.00 2 occurrences Near-duplicate function bodies in 5 places
Functions with the same first-5-line body hash: selfcal_scripts/benchmarks/benchmark_d3_ch17_mid.py:copy_to_nvme, selfcal_scripts/benchmarks/benchmark_d3_ch17_stable.py:copy_to_nvme, selfcal_scripts/benchmarks/benchmark_d3_ch17_numcol3.py:copy_to_nvme, selfcal_scripts/benchmarks/benchmark_d3_ch17_t…
2 occurrences
repo-level (2 hits)
duplicatesduplication
low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 8 places
Functions with the same first-5-line body hash: selfcal_scripts/drivers/run_cal.py:remap_to_nvme, selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_SE.py:remap_to_nvme, selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_NE.py:remap_to_nvme, selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_NW.py:remap_to_…
duplicatesduplication
low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 9 places
Functions with the same first-5-line body hash: selfcal_scripts/benchmarks/run_cal_baseline_test.py:mask_bright_pixels, selfcal_scripts/drivers/run_cal.py:mask_bright_pixels, selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_SE.py:mask_bright_pixels, selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_NE…
duplicatesduplication
low System graph quality License conf 1.00 No license file detected
No LICENSE/COPYING/NOTICE file was found. Generated repositories often omit licensing, which blocks reuse and automated intake.
Repo hardeningGenerated repo pattern
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `_remosaic_v2` in selfcal_scripts/experiments/run_mosaic_polyconstraint.py:137
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `C_old` in selfcal_scripts/zodi_anchor/prototype_pedestal_anchor_v2.py:10
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `dC_v2` in selfcal_scripts/zodi_anchor/diag_overlap_subchannel_continuity.py:37
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `slope_old` in selfcal_scripts/zodi_anchor/diag_joint_amp_fit.py:306
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `slope_old` in selfcal_scripts/zodi_anchor/diag_resid_features.py:113
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `slope_old` in selfcal_scripts/zodi_anchor/prototype_pedestal_anchor.py:456
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `t_copy` in selfcal_scripts/benchmarks/run_cal_baseline_test.py:284
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `t_copy` in selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_NE.py:382
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `t_copy` in selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_NW.py:382
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `t_copy` in selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_SE.py:382
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `t_copy` in selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_SW.py:382
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `t_copy` in selfcal_scripts/drivers/run_cal.py:214
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `t_copy` in selfcal_scripts/experiments/run_cal_d5.py:199
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `t_copy` in selfcal_scripts/experiments/run_cal_damp_offset.py:199
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `t_copy` in selfcal_scripts/experiments/run_cal_k2_readout.py:251
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `t_copy` in selfcal_scripts/experiments/run_cal_pahfit.py:221
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph software Dead code conf 1.00 Possibly dead Python function: compute_overlapping_frames
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
selfcal_scripts/drivers/chunked_NEP/chunk_filter.py:27
low System graph software Dead code conf 1.00 Possibly dead Python function: compute_overlapping_frames_from_cache
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
selfcal_scripts/drivers/chunked_NEP/chunk_filter.py:107
low System graph software Dead code conf 1.00 14 occurrences Possibly dead Python function: copy_to_nvme
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
12 files, 12 locations
selfcal_scripts/benchmarks/benchmark_d3_ch17_mid.py:114
selfcal_scripts/benchmarks/benchmark_d3_ch17_numcol3.py:119
selfcal_scripts/benchmarks/benchmark_d3_ch17_poly.py:386
selfcal_scripts/benchmarks/benchmark_d3_ch17_stable.py:398
selfcal_scripts/benchmarks/benchmark_d3_ch17_tuned.py:133
selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_NE.py:375
selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_NW.py:375
selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_SE.py:375
low System graph software Dead code conf 1.00 Possibly dead Python function: extract_reproj_metadata
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
selfcal_scripts/zodi_anchor/build_predictions.py:73
low System graph software Dead code conf 1.00 4 occurrences Possibly dead Python function: load_frame_list
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
4 files, 4 locations
selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_NE.py:244
selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_NW.py:244
selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_SE.py:244
selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_SW.py:244
low System graph software Dead code conf 1.00 8 occurrences Possibly dead Python function: mask_bright_pixels
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
8 files, 8 locations
selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_NE.py:232
selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_NW.py:232
selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_SE.py:232
selfcal_scripts/drivers/chunked_NEP/run_cal_NEP_SW.py:232
selfcal_scripts/drivers/run_cal.py:101
selfcal_scripts/experiments/run_cal_d5.py:103
selfcal_scripts/experiments/run_cal_damp_offset.py:103
selfcal_scripts/experiments/run_cal_pahfit.py:116
low System graph software Dead code conf 1.00 Possibly dead Python function: query
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
selfcal_scripts/zodi_anchor/diag_resid_features.py:220
low System graph quality Provenance conf 1.00 Shallow git history limits provenance confidence
The repository is a shallow clone. Origin/evolution analysis cannot distinguish fresh generation, imported legacy code, or long-lived human code with high confidence.
Git historyGenerated repo pattern
low System graph quality Complexity conf 1.00 Very large file: SelfCal/lsqr.py (1484 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: SelfCal/PipelineWrapper.py (1099 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
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