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Issue title

`self.soft_thresh_min` used but never assigned in __init__

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Pick exactly which findings appear in the issue body. By default the top 5 are included. Uncheck noise, check what matters.

Top 5 (default)

Severity	Rule	Title	File:line
CRIT	`MINED107`	[MINED107] Missing import: `stat` used but not imported: The file uses `stat.something(..…	`data/_common.py:140`
CRIT	`MINED107`	[MINED107] Missing import: `time` used but not imported: The file uses `time.something(..…	`cluster/rrze_agent.py:680`
HIGH	`MINED108`	[MINED108] `self.blend_min` used but never assigned in __init__: Method `forward` of clas…	`pentathlon/demo_dl_reference/solver_wu_…:235`
HIGH	`MINED108`	[MINED108] `self.soft_thresh_max` used but never assigned in __init__: Method `forward` o…	`pentathlon/demo_dl_reference/solver_wu_…:229`
HIGH	`MINED108`	[MINED108] `self.soft_thresh_min` used but never assigned in __init__: Method `forward` o…	`pentathlon/demo_dl_reference/solver_wu_…:228`
HIGH	`MINED108`	[MINED108] `self.band_scale_max` used but never assigned in __init__: Method `_aliasing_f…	`pentathlon/demo_dl_reference/solver_wu_…:187`
HIGH	`MINED108`	[MINED108] `self.band_scale_min` used but never assigned in __init__: Method `_aliasing_f…	`pentathlon/demo_dl_reference/solver_wu_…:187`
HIGH	`MINED108`	[MINED108] `self.band_centers` used but never assigned in __init__: Method `_aliasing_fre…	`pentathlon/demo_dl_reference/solver_wu_…:182`
HIGH	`MINED108`	[MINED108] `self.band_filters` used but never assigned in __init__: Method `_aliasing_fre…	`pentathlon/demo_dl_reference/solver_wu_…:199`
HIGH	`MINED108`	[MINED108] `self.r_map` used but never assigned in __init__: Method `_aliasing_free_fbp` …	`pentathlon/demo_dl_reference/solver_wu_…:181`
HIGH	`MINED108`	[MINED108] `self.r_map` used but never assigned in __init__: Method `_aliasing_free_fbp` …	`pentathlon/demo_dl_reference/solver_wu_…:180`
HIGH	`MINED108`	[MINED108] `self.dc_norm` used but never assigned in __init__: Method `forward` of class …	`pentathlon/demo_dl_reference/solver_ham…:155`
HIGH	`MINED108`	[MINED108] `self.inv_sigma_sq` used but never assigned in __init__: Method `_rho_prime` o…	`pentathlon/demo_dl_reference/solver_ham…:136`
HIGH	`MINED108`	[MINED108] `self.centres` used but never assigned in __init__: Method `_rho_prime` of cla…	`pentathlon/demo_dl_reference/solver_ham…:135`
HIGH	`MINED108`	[MINED108] `self.inv_sigma_sq` used but never assigned in __init__: Method `_rho_prime` o…	`pentathlon/demo_dl_reference/solver_ham…:126`
HIGH	`MINED108`	[MINED108] `self.centres` used but never assigned in __init__: Method `_rho_prime` of cla…	`pentathlon/demo_dl_reference/solver_ham…:124`
HIGH	`MINED108`	[MINED108] `self.dv0` used but never assigned in __init__: Method `decode` of class `Forw…	`scripts/fit_geometry_forward_L014_v4.py:149`
HIGH	`MINED108`	[MINED108] `self.sdd0` used but never assigned in __init__: Method `decode` of class `For…	`scripts/fit_geometry_forward_L014_v4.py:146`
HIGH	`MINED108`	[MINED108] `self.sod0` used but never assigned in __init__: Method `decode` of class `For…	`scripts/fit_geometry_forward_L014_v4.py:145`
HIGH	`MINED108`	[MINED108] `self._dy` used but never assigned in __init__: Method `_siddon_segments` of c…	`ddssl_ldct/siddon_projector.py:218`
HIGH	`MINED108`	[MINED108] `self._dx` used but never assigned in __init__: Method `_siddon_segments` of c…	`ddssl_ldct/siddon_projector.py:218`
HIGH	`MINED108`	[MINED108] `self._sy` used but never assigned in __init__: Method `_siddon_segments` of c…	`ddssl_ldct/siddon_projector.py:217`
HIGH	`MINED108`	[MINED108] `self._sx` used but never assigned in __init__: Method `_siddon_segments` of c…	`ddssl_ldct/siddon_projector.py:217`
HIGH	`MINED108`	[MINED108] `self._sx` used but never assigned in __init__: Method `_siddon_segments` of c…	`ddssl_ldct/siddon_projector.py:215`
HIGH	`MINED108`	[MINED108] `self._sx` used but never assigned in __init__: Method `_siddon_segments` of c…	`ddssl_ldct/siddon_projector.py:214`
HIGH	`MINED108`	[MINED108] `self._redundancy_weights` used but never assigned in __init__: Method `fbp` o…	`ddssl_ldct/pyronn_projector.py:452`
HIGH	`MINED108`	[MINED108] `self._redundancy_weights` used but never assigned in __init__: Method `fbp` o…	`ddssl_ldct/pyronn_projector.py:453`
HIGH	`SEC103`	[SEC103] LDAP injection — non-constant search filter: User input concatenated into an LDA…	`scripts/parse_tv_search.py:48`
HIGH	`MINED001`	[MINED001] Bare Except Pass: except: pass or except Exception: pass — silently swallows e…	`scripts/dd_and_itnet_search.py:38`
HIGH	`MINED001`	[MINED001] Bare Except Pass: except: pass or except Exception: pass — silently swallows e…	`scripts/bf_search_agent.py:35`
HIGH	`MINED001`	[MINED001] Bare Except Pass: except: pass or except Exception: pass — silently swallows e…	`scripts/agent4ct_record.py:142`
HIGH	`SEC128`	[SEC128] Async function without await — fire-and-forget Promise (AI mistake): Async call …	`scripts/cache_proj_flat_L014_full.py:110`
HIGH	`SEC128`	[SEC128] Async function without await — fire-and-forget Promise (AI mistake): Async call …	`scripts/cache_proj_flat_L014.py:138`
HIGH	`SEC128`	[SEC128] Async function without await — fire-and-forget Promise (AI mistake): Async call …	`data/_common.py:38`
HIGH	`SEC029`	[SEC029] Server-Side Request Forgery (SSRF) — outbound HTTP from user input: Outbound HTT…	`data/fetch_dl_spectral.py:62`
HIGH	`SEC029`	[SEC029] Server-Side Request Forgery (SSRF) — outbound HTTP from user input: Outbound HTT…	`data/fetch_dl_sparse_view.py:103`
HIGH	`SEC029`	[SEC029] Server-Side Request Forgery (SSRF) — outbound HTTP from user input: Outbound HTT…	`data/_common.py:57`
HIGH	`CORE_NO_TESTS`	No test files found	—
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`scripts/sanity_pyronn.py:102`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`scripts/det_spacing_ablation_L014.py:68`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`scripts/det_spacing_ablation_L014.py:196`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`scripts/det_spacing_ablation_L014.py:59`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`scripts/pixel_spacing_ablation_L014.py:67`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`scripts/pixel_spacing_ablation_L014.py:198`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`scripts/pixel_spacing_ablation_L014.py:58`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`scripts/ffs_sign_ablation_L014.py:71`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`scripts/ffs_sign_ablation_L014.py:240`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`scripts/ffs_sign_ablation_L014.py:62`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`scripts/z_aligned_validation.py:63`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`scripts/z_aligned_validation.py:54`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`scripts/fit_fbp_geometry_L014.py:71`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`scripts/fit_fbp_geometry_L014.py:62`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`data/fetch_mayo_ldct.py:194`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`data/fetch_mayo_ldct.py:355`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`data/fetch_mayo_ldct.py:329`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`data/fetch_mayo_ldct.py:299`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`data/fetch_mayo_ldct.py:181`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`cluster/rrze_agent.py:727`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`cluster/rrze_agent.py:672`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`ddssl_ldct/harness.py:472`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`ddssl_ldct/harness.py:323`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`ddssl_ldct/metrics.py:325`
MED	`MINED111`	[MINED111] Bare except continues silently: Bare `except:` (or `except Exception:`) that r…	`ddssl_ldct/metrics.py:321`
MED	`SEC011`	[SEC011] Unsafe PyTorch Model Loading: torch.load() uses pickle internally and can execut…	`scripts/ddpm_sanity_sample.py:39`
MED	`MINED124`	[MINED124] requirements.txt: `pyyaml` has no version pin: Unpinned pip requirement means …	`requirements.txt:7`
MED	`MINED124`	[MINED124] requirements.txt: `matplotlib` has no version pin: Unpinned pip requirement me…	`requirements.txt:6`
MED	`MINED124`	[MINED124] requirements.txt: `tqdm` has no version pin: Unpinned pip requirement means ev…	`requirements.txt:5`
MED	`MINED124`	[MINED124] requirements.txt: `scikit-image` has no version pin: Unpinned pip requirement …	`requirements.txt:4`
MED	`MINED124`	[MINED124] requirements.txt: `scipy` has no version pin: Unpinned pip requirement means e…	`requirements.txt:3`
MED	`MINED124`	[MINED124] requirements.txt: `numpy<3` has no version pin: Unpinned pip requirement means…	`requirements.txt:2`
MED	`CORE_NO_CI`	No CI/CD configuration found	—
LOW	`SEC132`	[SEC132] String concat where the language has interpolation (AI style drift): String buil…	`scripts/gen_mayo_leaderboard.py:114`
LOW	`COMP001`	[COMP001] High cognitive complexity: Function `stage_h5` has cognitive complexity 8 (Sona…	`data/fetch_dl_spectral.py:81`
LOW	`COMP001`	[COMP001] High cognitive complexity: Function `main` has cognitive complexity 9 (SonarSou…	`data/fetch_dl_spectral.py:150`
LOW	`COMP001`	[COMP001] High cognitive complexity: Function `download` has cognitive complexity 14 (Son…	`data/_common.py:42`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_wu_…:185`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_wu_…:236`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_wu_…:233`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_wu_…:227`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_tv_…:180`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_tv_…:108`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_tv_…:70`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_tv_…:68`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_r2g…:187`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_lea…:242`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_lea…:241`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_lea…:158`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_lea…:146`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_itn…:211`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_itn…:210`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_itn…:146`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_itn…:28`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_itn…:109`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_itn…:84`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_itn…:168`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_itn…:110`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_ham…:75`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_fbp…:38`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_dua…:172`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_dua…:65`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_dua…:54`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_dua…:42`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_dua…:69`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_dif…:15`
LOW	`AIC003`	Duplicated implementation block across source files	`pentathlon/demo_dl_reference/solver_dif…:50`
LOW	`CORE_NO_LICENSE`	No LICENSE file	—
INFO	`MINED050`	[MINED050] Stub Only Function: Function declared but body is just pass, return None, rais…	`scripts/dd_and_itnet_search.py:39`
INFO	`MINED050`	[MINED050] Stub Only Function: Function declared but body is just pass, return None, rais…	`scripts/bf_search_agent.py:36`
INFO	`MINED050`	[MINED050] Stub Only Function: Function declared but body is just pass, return None, rais…	`scripts/agent4ct_record.py:143`
INFO	`MINED064`	[MINED064] Python Input Call: input() blocks for stdin. Inappropriate in services.	`data/stage_mayo_sinos.py:16`
INFO	`MINED055`	[MINED055] Npm Install No Lockfile: Production image runs npm install (resolves new versi…	`cluster/setup.sh:54`
INFO	`MINED062`	[MINED062] Python Dataclass No Fields: @dataclass over an empty class — unfinished model.	`challenges/_common.py:21`

Reset to top 5 112 findings available (after auto-suppression of test files + won't-fix)

Issue body (markdown)

## Code-quality scan: `akmaier/Agent4CT`

**Score: 75/100 (B+)**  ·  112 findings  ·  scanned 2026-06-16 02:50 UTC  ·  39,352 LOC

| Severity | Count |
|---|---|
| CRITICAL | 2 |
| HIGH | 36 |
| MEDIUM | 33 |
| LOW | 35 |

📊 [Full filterable report](https://repobility.com/scan/a071c8ec-365f-4af3-bb20-2e5a9ec93643/)  ·  ![scorecard](https://repobility.com/scan/a071c8ec-365f-4af3-bb20-2e5a9ec93643/report.png?v=1781578258-s2)

### Top findings

1. **CRITICAL** `MINED107` — Missing import: `stat` used but not imported
   `data/_common.py:140` · ✓ Repobility
2. **CRITICAL** `MINED107` — Missing import: `time` used but not imported
   `cluster/rrze_agent.py:680` · ✓ Repobility
3. **HIGH** `MINED108` — `self.blend_min` used but never assigned in __init__
   `pentathlon/demo_dl_reference/solver_wu_2015_trainable.py:235` · ✓ Repobility
4. **HIGH** `MINED108` — `self.soft_thresh_max` used but never assigned in __init__
   `pentathlon/demo_dl_reference/solver_wu_2015_trainable.py:229` · ✓ Repobility
5. **HIGH** `MINED108` — `self.soft_thresh_min` used but never assigned in __init__
   `pentathlon/demo_dl_reference/solver_wu_2015_trainable.py:228` · ✓ Repobility

---

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Push this scan report to `akmaier/Agent4CT`