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abbas-ahmad-cowlar/LSTM_PFD

https://github.com/abbas-ahmad-cowlar/LSTM_PFD · scanned 2026-06-16 02:50 UTC (2 months, 1 week ago) · 10 languages

530 raw signals (237 security + 293 graph) 98th percentile · Python · large (100-500K LoC)

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UNIFIED Repobility · multi-layer engine · AI coders

Complete repo analysis

Last scanned 2 months, 1 week ago · v5 · 100 actionable findings from 2 signal sources. 269 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

JSON
Combined
89.9
/100
Security checks
85
93 findings
System graph
95
88.9% cov · 7 findings
Critical
4
click to filter
Agents
10
0 votes
Crowd
0
reported
Score breakdown â 2026-05-18-v5
Component Sub-score Weight Contribution
structure_score 60.0 0.15 9.00
security_score 100.0 0.25 25.00
testing_score 61.0 0.20 12.20
documentation_score 95.0 0.15 14.25
practices_score 88.0 0.15 13.20
code_quality 60.0 0.10 6.00
Overall 1.00 79.7
security_score may be inflated — optional security scanners were skipped on this fast scan
Severity distribution — click a segment to filter
Active filters: excluding tests × Reset all
Severity: Critical 4 High 28 Medium 11 Low 20 9-Layer: Software Security Quality Integrity Frontend Hardware Data Network Cicd Source: Security checks 93 System graph 7 Crowd 0 Layer: Quality 68 Security 11 Cicd 13 Software 5 Hardware 2 Frontend 1
Corpus Intelligence Cross-corpus context (cohort percentile, top patterns, fix plan) is shown only on repositories you own. Sign up and connect your repo to view it.
Scan summary Repository scanned at 94.8/100 with 88.9% coverage. It contains 40 nodes across 0 cross-layer flows, written primarily in mixed languages. Engine surfaced 7 findings — concentrated in quality (3), hardware (2), frontend (1). Risk profile is low: 0 critical, 0 high, 1 medium. Recommended next step: open the quality layer findings first — that's where the highest-impact wins live.

Showing 60 of 100 actionable findings. 369 raw detector signals were grouped into reader-sized issues. Click TP / FP to vote on a finding's accuracy — votes adjust the confidence weighting and improve detection across the platform.

high Security checks quality Quality conf 1.00 ✓ Repobility 24 occurrences [MINED107] Missing import: `signal` used but not imported: The file uses `signal.something(...)` but never imports `signal`. This raises NameError at runtime the first time the line executes.
Add `import signal` at the top of the file.
12 files, 12 locations
data/dataset.py:367
data/signal_augmentation.py:138
data/transforms.py:398
packages/core/evaluation/physics_interpretability.py:325
packages/core/explainability/integrated_gradients.py:273
packages/core/explainability/shap_explainer.py:434
packages/core/explainability/uncertainty_quantification.py:425
packages/core/training/advanced_augmentation.py:189
critical Security checks security Secret conf 1.00 [SEC051] Stripe live/test key: Stripe API key (live or test). Live keys can charge real cards. Ported from gitleaks stripe-access-token (MIT).
Roll the key in Stripe Dashboard immediately. If a live key was committed, audit Stripe events for unauthorized charges.
packages/dashboard/models/api_key.py:29
critical Security checks security Secret conf 1.00 [SEC051] Stripe live/test key: Stripe API key (live or test). Live keys can charge real cards. Ported from gitleaks stripe-access-token (MIT).
Roll the key in Stripe Dashboard immediately. If a live key was committed, audit Stripe events for unauthorized charges.
packages/dashboard/api/api_keys.py:31
critical Security checks quality Practices conf 0.82 Foundry mined mock as real or placeholder: abbas-ahmad-cowlar/LSTM_PFD
Graph query export: Mock, sample, placeholder, or self-attested behavior treated as real Query id: mock_as_real_or_placeholder Query type: motif_query Intent: Hard negatives for fake completeness and missing real data paths. Motif: mock_as_real_or_placeholder Training usage: hard_negative Graph gol…
critical Security checks security auth conf 0.78 2 occurrences Foundry mined security auth guardrail gaps: abbas-ahmad-cowlar/LSTM_PFD
Graph query export: Security/auth changes without enough guardrails Query id: security_auth_guardrail_gaps Query type: motif_query Intent: Assumption-check security/auth examples requiring stronger tests or CI. Motif: security_auth_without_guardrails Training usage: assumption_check Graph gold labe…
2 occurrences
repo-level (2 hits)
low Security checks quality Quality conf 1.00 ✓ Repobility [MINED006] Overcatch Baseexception: except BaseException: ... — prevents Ctrl+C and SystemExit from working.
Review and fix per the pattern semantics. See CWE-705 / for context.
packages/dashboard/dashboard_config.py:255
high Security checks quality Quality conf 1.00 ✓ Repobility [MINED020] Logging Credential Via Fstring: logger.error(f"failed for {api_key}") — secrets end up in log aggregators / sentry.
Review and fix per the pattern semantics. See CWE-532 / A09:2021 for context.
packages/dashboard/middleware/rate_limiter.py:123
high Security checks quality Quality conf 1.00 ✓ Repobility [MINED020] Logging Credential Via Fstring: logger.error(f"failed for {api_key}") — secrets end up in log aggregators / sentry.
Review and fix per the pattern semantics. See CWE-532 / A09:2021 for context.
packages/dashboard/middleware/api_key_auth.py:89
high Security checks quality Quality conf 1.00 ✓ Repobility [MINED106] Phantom test coverage: test_augmentations: Test function `test_augmentations` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.
Add an explicit assertion that captures the test's intent, or remove the test.
data/signal_augmentation.py:421
high Security checks quality Quality conf 1.00 ✓ Repobility [MINED106] Phantom test coverage: test_callbacks: Test function `test_callbacks` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.
Add an explicit assertion that captures the test's intent, or remove the test.
packages/core/training/cnn_callbacks.py:457
high Security checks quality Quality conf 1.00 ✓ Repobility [MINED106] Phantom test coverage: test_checkpoint_manager: Test function `test_checkpoint_manager` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.
Add an explicit assertion that captures the test's intent, or remove the test.
utils/checkpoint_manager.py:358
high Security checks quality Quality conf 1.00 ✓ Repobility [MINED106] Phantom test coverage: test_cnn_analyzer: Test function `test_cnn_analyzer` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.
Add an explicit assertion that captures the test's intent, or remove the test.
visualization/cnn_analysis.py:569
high Security checks quality Quality conf 1.00 ✓ Repobility [MINED106] Phantom test coverage: test_cnn_visualizer: Test function `test_cnn_visualizer` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.
Add an explicit assertion that captures the test's intent, or remove the test.
visualization/cnn_visualizer.py:435
high Security checks quality Quality conf 1.00 ✓ Repobility [MINED106] Phantom test coverage: test_early_stopping: Test function `test_early_stopping` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.
Add an explicit assertion that captures the test's intent, or remove the test.
utils/early_stopping.py:284
high Security checks quality Quality conf 1.00 ✓ Repobility [MINED106] Phantom test coverage: test_ood_generalization: Test function `test_ood_generalization` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.
Add an explicit assertion that captures the test's intent, or remove the test.
packages/core/evaluation/pinn_evaluator.py:312
high Security checks quality Quality conf 1.00 ✓ Repobility [MINED106] Phantom test coverage: test_optimizers: Test function `test_optimizers` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.
Add an explicit assertion that captures the test's intent, or remove the test.
packages/core/training/cnn_optimizer.py:333
high Security checks quality Quality conf 1.00 ✓ Repobility [MINED106] Phantom test coverage: test_robustness: Test function `test_robustness` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.
Add an explicit assertion that captures the test's intent, or remove the test.
packages/dashboard/services/evaluation_service.py:225
high Security checks quality Quality conf 1.00 ✓ Repobility [MINED106] Phantom test coverage: test_sample_efficiency: Test function `test_sample_efficiency` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.
Add an explicit assertion that captures the test's intent, or remove the test.
packages/core/evaluation/pinn_evaluator.py:253
high Security checks quality Quality conf 1.00 ✓ Repobility [MINED106] Phantom test coverage: test_webhook: Test function `test_webhook` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.
Add an explicit assertion that captures the test's intent, or remove the test.
packages/dashboard/services/webhook_service.py:262
high Security checks quality Quality conf 1.00 ✓ Repobility [MINED106] Phantom test coverage: test_webhook_handler: Test function `test_webhook_handler` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.
Add an explicit assertion that captures the test's intent, or remove the test.
packages/dashboard/callbacks/webhook_callbacks.py:339
high Security checks quality Quality conf 1.00 ✓ Repobility 22 occurrences [MINED108] `self.signals` used but never assigned in __init__: Method `__getitem__` of class `AugmentedBearingDataset` reads `self.signals`, but no assignment to it exists in __init__ (and no class-level fallback). This raises AttributeError the first time the method runs against an instance.
Initialize `self.signals = <default>` in __init__, or add a class-level default.
4 files, 22 locations
data/dataset.py:361, 362, 376, 453, 459, 467, 469, 474, +2 more (10 hits)
data/transforms.py:200, 234, 268 (6 hits)
tests/load_tests.py:259, 314, 367, 400, 434 (5 hits)
utils/early_stopping.py:271
high Security checks software dependencies conf 0.90 ✓ Repobility [MINED118] Dockerfile FROM `python:3.10-slim` not pinned by digest: `FROM python:3.10-slim` resolves the tag at build time. The registry CAN re-push a different image for the same tag, so every build is potentially different. Production images should pin to `image@sha256:...` for reproducibility + supply-chain integrity.
Replace with: `FROM python:3.10-slim@sha256:<digest>`. Get the digest from `docker manifest inspect`. Re-pin via a scheduled bot (Renovate, Dependabot).
packages/dashboard/Dockerfile:1
high Security checks software dependencies conf 0.90 ✓ Repobility [MINED118] Dockerfile FROM `python:3.10-slim` not pinned by digest: `FROM python:3.10-slim` resolves the tag at build time. The registry CAN re-push a different image for the same tag, so every build is potentially different. Production images should pin to `image@sha256:...` for reproducibility + supply-chain integrity.
Replace with: `FROM python:3.10-slim@sha256:<digest>`. Get the digest from `docker manifest inspect`. Re-pin via a scheduled bot (Renovate, Dependabot).
Dockerfile:5
high Security checks software dependencies conf 0.90 ✓ Repobility 7 occurrences [MINED131] pre-commit hook `https://github.com/psf/black` pinned to mutable rev `23.12.0`: `.pre-commit-config.yaml` references `https://github.com/psf/black` at `rev: 23.12.0`. If `{rev}` is a branch or version tag, the repo owner can push new code there and `pre-commit install --install-hooks` will fetch it on every developer's machine.
Pin to a commit SHA: `rev: <40-char-sha>` and bump it through `pre-commit autoupdate` (which writes to PRs that are reviewed).
lines 7, 15, 22, 30, 38, 55, 68
.pre-commit-config.yaml:7, 15, 22, 30, 38, 55, 68 (7 hits)
low Security checks security path traversal conf 0.80 [SEC013] Path Traversal — User Input in File Path: User-controlled input used in file path without sanitization. Allows reading arbitrary files.
Use os.path.realpath() and verify the path starts with your expected base directory. Use secure_filename() for uploads.
packages/dashboard/middleware/rate_limiter.py:92
low Security checks cicd CI/CD security conf 0.84 2 occurrences Database service publishes a host port
Use `expose` for service-to-service access, bind to 127.0.0.1 for local-only access, or protect the port with firewall rules.
lines 3, 19
packages/dashboard/docker-compose.yml:3, 19 (2 hits)
CI/CD securitycontainers
high Security checks quality Practices conf 0.84 50 occurrences Foundry mined bad chains: abbas-ahmad-cowlar/LSTM_PFD
Comment chain pattern product: bad_chains Repo: abbas-ahmad-cowlar/LSTM_PFD Thread: abbas-ahmad-cowlar/LSTM_PFD#9 Outcome: not_resolved_or_not_observed Thread label: thread_has_human_issue_without_fix_context Source graph label: source_backed_multi_signal_graph Reasons: source_graph_has_real_artifa…
50 occurrences
repo-level (50 hits)
high Security checks quality Quality conf 0.76 Foundry mined schema ui api mismatch: abbas-ahmad-cowlar/LSTM_PFD
Graph query export: Schema, UI, and API mismatch Query id: schema_ui_api_mismatch Query type: motif_query Intent: Assumption-check examples for data-path consistency across layers. Motif: schema_ui_api_mismatch Training usage: assumption_check Graph gold label: assumption_check Repo: abbas-ahmad-co…
high Security checks quality Testing conf 0.78 4 occurrences Foundry mined test ci gap after feedback: abbas-ahmad-cowlar/LSTM_PFD
Graph query export: Feedback exposes missing tests or CI Query id: test_ci_gap_after_feedback Query type: motif_query Intent: Hard negatives for feedback/fix chains without adequate guardrails. Motif: test_ci_gap_after_feedback Training usage: hard_negative Graph gold label: weak_supervision_needs_…
4 occurrences
repo-level (4 hits)
medium Security checks security auth conf 0.92 [AUC001] No Repobility access matrix policy found: The repository uses web/API frameworks but does not define .repobility/access.yml or equivalent authorization documentation.
Add .repobility/access.yml mapping routes to anonymous, authenticated, owner, admin, and super_admin. Keep business-specific rules in the repo so CI can enforce them.
low Security checks quality Error handling conf 1.00 3 occurrences [ERR001] Silent Exception Swallowing: Silently swallowing all exceptions hides bugs. Even in cleanup code, log at DEBUG level.
Log the error: `except Exception: logger.debug('cleanup failed', exc_info=True)`. Or handle specific exception types.
3 files, 3 locations
packages/dashboard/integrations/phase0_adapter.py:114
packages/dashboard/integrations/phase1_adapter.py:132
packages/dashboard/services/monitoring_service.py:189
medium Security checks quality Quality conf 1.00 ✓ Repobility 6 occurrences [MINED109] Mutable default argument in `__init__` (list): `def __init__(... = []/{}/set())` — Python's default value is constructed ONCE at function definition time and shared across all calls. Mutating it in one call mutates it for every future call too.
Use None as the default and create the collection inside the function: `def __init__(x=None): x = x or []`
4 files, 6 locations
packages/core/evaluation/robustness_tester.py:31, 72 (2 hits)
scripts/research/ood_testing.py:83, 119 (2 hits)
data/dataset.py:326
packages/dashboard/services/evaluation_service.py:225
medium Security checks quality Quality conf 1.00 [SEC123] Production stack trace / debug output exposed: Debug mode left on in production exposes stack traces, environment variables, framework internals — sometimes triggers RCE (Django debug page with arbitrary template eval).
Set DEBUG=False / APP_DEBUG=false in production. Provide a generic 500 handler that logs to backend but returns a sanitized page to clients.
packages/dashboard/docker-compose.yml:60
low Security checks quality Error handling conf 0.55 ✓ Repobility 25 occurrences Broad exception handler needs review
This handler catches Exception/BaseException. It is actionable when it swallows errors without logging, re-raising, or returning a structured error. Handlers that intentionally convert exceptions into typed error results should not be treated as high risk.
12 files, 23 locations
packages/core/evaluation/architecture_comparison.py:286, 295, 302, 310 (4 hits)
packages/core/pipelines/classical_ml_pipeline.py:309, 414, 422 (3 hits)
visualization/feature_visualization.py:337, 342, 347 (3 hits)
visualization/latent_space_analysis.py:176, 181, 186 (3 hits)
packages/core/evaluation/physics_interpretability.py:352, 497 (2 hits)
packages/core/evaluation/pinn_evaluator.py:181, 247 (2 hits)
data/signal_validation.py:219
packages/core/models/base_model.py:173
Error handlingquality
medium Security checks cicd CI/CD security conf 0.74 Database service has no persistent data volume
Mount the database data directory to a named Docker volume or managed persistent disk, and document backup and restore testing.
packages/dashboard/docker-compose.yml:19 CI/CD securitycontainers
high Security checks cicd CI/CD security conf 0.82 Docker final stage has no non-root USER
Add a non-root USER in the final runtime stage after files and permissions are prepared.
packages/dashboard/Dockerfile:1 CI/CD securitycontainers
medium Security checks cicd CI/CD security conf 0.76 Dockerfile copies broad context with incomplete .dockerignore
Tighten .dockerignore or replace COPY . with explicit COPY statements.
packages/dashboard/Dockerfile:19 CI/CD securitycontainers
medium Security checks cicd CI/CD security conf 0.76 Dockerfile copies broad context with incomplete .dockerignore
Tighten .dockerignore or replace COPY . with explicit COPY statements.
Dockerfile:44 CI/CD securitycontainers
medium Security checks quality Practices conf 0.62 11 occurrences Foundry mined assumption checks: abbas-ahmad-cowlar/LSTM_PFD
Comment chain pattern product: assumption_checks Repo: abbas-ahmad-cowlar/LSTM_PFD Thread: abbas-ahmad-cowlar/LSTM_PFD#70 Outcome: ambiguous_needs_more_evidence Thread label: thread_needs_classification Source graph label: source_backed_multi_signal_graph Reasons: source_graph_has_real_artifacts, s…
11 occurrences
repo-level (11 hits)
medium Security checks quality maintenance conf 0.70 17 occurrences Foundry mined blueprint gap alignment: abbas-ahmad-cowlar/LSTM_PFD
Graph query export: Human feedback aligned with blueprint or architecture gaps Query id: blueprint_gap_alignment Query type: motif_query Intent: Curriculum-gap examples connecting issue threads to helicopter-view gaps. Motif: blueprint_gap_alignment Training usage: curriculum_gap Graph gold label: …
17 occurrences
repo-level (17 hits)
medium Security checks quality Practices conf 0.70 67 occurrences Foundry mined unresolved feedback: abbas-ahmad-cowlar/LSTM_PFD
Graph query export: Human feedback without linked fix evidence Query id: unresolved_feedback Query type: motif_query Intent: Negative/unresolved examples that should not be hallucinated into fixes. Motif: unlinked_feedback_needs_evidence Training usage: negative_or_unresolved Graph gold label: assu…
67 occurrences
repo-level (67 hits)
medium Security checks quality Quality conf 0.78 Public web service has no security.txt
Add /.well-known/security.txt with Contact, Expires, Canonical, Preferred-Languages, and Policy fields. Keep the contact endpoint monitored.
.well-known/security.txt
medium System graph cicd CI/CD security conf 1.00 No CI/CD pipelines detected
No GitHub Actions, GitLab CI, or CircleCI configs found. Without CI you can't gate deploys on tests/lints.
CI/CD securityCoverage
low Security checks cicd CI/CD security conf 0.72 .dockerignore misses sensitive defaults
Add missing patterns such as .env, .git, private keys, certificates, dependency folders, and local databases.
.dockerignore CI/CD securitycontainers
high Security checks cicd CI/CD security conf 0.62 4 occurrences Compose service lacks no-new-privileges hardening
Add `security_opt: ["no-new-privileges:true"]` unless the service has a documented need for privilege escalation.
2 files, 4 locations
packages/dashboard/docker-compose.yml:29, 46, 67 (3 hits)
docker-compose.yml:11
CI/CD securitycontainers
low Security checks cicd CI/CD security conf 0.58 Database password is wired through an environment variable placeholder
Prefer Compose secrets or your platform secret manager with *_FILE variables where the image supports them. Rotate only if a real value was committed.
packages/dashboard/docker-compose.yml:3 CI/CD securitycontainers
low Security checks cicd CI/CD security conf 0.72 Dockerfile installs recommended OS packages
Add `--no-install-recommends` and explicitly list only packages the image needs.
packages/dashboard/Dockerfile:6 CI/CD securitycontainers
low Security checks cicd CI/CD security conf 0.72 Dockerfile installs recommended OS packages
Add `--no-install-recommends` and explicitly list only packages the image needs.
Dockerfile:14 CI/CD securitycontainers
high Security checks cicd CI/CD security conf 0.72 Dockerfile keeps pip download cache
Use `pip install --no-cache-dir ...` in container builds.
Dockerfile:29 CI/CD securitycontainers
low Security checks quality Quality conf 0.60 13 occurrences Duplicated implementation block across source files
Duplicate implementation blocks are maintenance debt. Keep them visible, but they are not a high-severity defect unless the duplicated logic is security-sensitive or drifting.
12 files, 13 locations
packages/core/training/pinn_trainer.py:201, 259 (2 hits)
data/signal_generation/generator.py:421
packages/core/models/classical/random_forest.py:65
packages/core/models/classical/svm_classifier.py:74
packages/core/models/cnn/multi_scale_cnn.py:202
packages/core/models/resnet/se_resnet.py:229
packages/core/training/cnn_callbacks.py:274
packages/dashboard/callbacks/system_health_callbacks.py:285
duplicationquality
low Security checks cicd CI/CD security conf 0.90 ✓ Repobility 4 occurrences GitHub Action is tag-pinned rather than SHA-pinned
[MINED115] Action `actions/checkout` pinned to mutable ref `@v4`: `uses: actions/checkout@v4` resolves at workflow-run time. Tags and branches can be re-pushed by the action owner; that made the tj-actions/changed-files compromise (2025) instantly affect many repos. Treat official first-party actio…
2 files, 4 locations
.github/workflows/lint.yml:16, 17 (2 hits)
.github/workflows/test.yml:17, 18 (2 hits)
CI/CD securitySupply chainGitHub Actions
low Security checks quality Documentation No LICENSE file
Add a LICENSE file to your repository. Use choosealicense.com to pick the right license (MIT for permissive, Apache 2.0 for patent protection, GPL for copyleft).
low Security checks quality Quality conf 0.64 Public docs site has no llms.txt
Add llms.txt with the product summary, canonical docs, API endpoints, security guidance, and preferred CLI workflow for AI agents.
llms.txt
low Security checks quality Quality conf 0.50 Public web app has no humans.txt
Add humans.txt with team ownership, contact URL, key documentation links, and the last-updated date.
humans.txt
low Security checks quality Quality conf 0.74 Public web app has no robots.txt
Add robots.txt at the web root or a framework-native robots route. Include an explicit Sitemap directive and disallow only private paths.
robots.txt
low Security checks quality Quality conf 0.72 Public web app has no sitemap
Add sitemap.xml, a sitemap index, or a framework-native sitemap route and reference it from robots.txt.
sitemap.xml
low System graph quality Production readiness conf 1.00 Composite production-readiness gap
Multiple low-cost hardening controls are missing together: license, ci. Opus verification showed these co-occurring gaps are a better readiness signal than reading each flag in isolation.
Repo hardeningGenerated repo pattern
low System graph hardware Coverage conf 1.00 Containers defined but no K8s/orchestration manifest found
Repo has Dockerfiles/compose but no Kubernetes/Nomad manifests. If the target deployment is K8s, the manifests may live in a separate ops repo.
Deployment
low System graph hardware Supply chain conf 1.00 Docker base image is tag-pinned but not digest-pinned: python:3.10-slim
Container tags can be retagged upstream. Pin production base images to a reviewed digest (`image@sha256:...`) when reproducibility and supply-chain integrity matter.
Dockerfile:5 containersPinned dependencies
low System graph quality License conf 1.00 No license file detected
No LICENSE/COPYING/NOTICE file was found. Generated repositories often omit licensing, which blocks reuse and automated intake.
Repo hardeningGenerated repo pattern
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