latchbio/latch

Component	Sub-score	Weight	Contribution
`structure_score`	85.0	0.15	12.75
`security_score`	17.6	0.25	4.40
`testing_score`	12.0	0.20	2.40
`documentation_score`	86.0	0.15	12.90
`practices_score`	74.0	0.15	11.10
`code_quality`	52.9	0.10	5.29
Overall		1.00	48.8

high Security checks quality Quality conf 1.00 ✓ Repobility 3 occurrences Missing import: `queue` used but not imported

The file uses `queue.something(...)` but never imports `queue`. This raises NameError at runtime the first time the line executes.

3 files, 3 locations

src/latch_cli/centromere/ast_parsing.py:92

src/latch_cli/nextflow/parse_schema.py:439

src/latch_cli/services/k8s/develop.py:199

low Security checks quality Quality conf 1.00 ✓ Repobility [MINED006] Overcatch Baseexception: except BaseException: ... — prevents Ctrl+C and SystemExit from working.

Review and fix per the pattern semantics. See CWE-705 / for context.

src/latch_cli/services/preview.py:206

low Security checks quality Quality conf 1.00 ✓ Repobility [MINED006] Overcatch Baseexception: except BaseException: ... — prevents Ctrl+C and SystemExit from working.

Review and fix per the pattern semantics. See CWE-705 / for context.

src/latch_cli/menus.py:317

high Security checks quality Quality conf 1.00 ✓ Repobility [MINED021] Path Traversal Os Join: os.path.join(user_dir, filename) where filename can contain "../" — directory escape.

Review and fix per the pattern semantics. See CWE-22 / A01:2021 for context.

src/latch_cli/centromere/utils.py:139

high Security checks security path traversal conf 0.80 [SEC013] Path Traversal — User Input in File Path: User-controlled input used in file path without sanitization. Allows reading arbitrary files.

Use os.path.realpath() and verify the path starts with your expected base directory. Use secure_filename() for uploads.

src/latch_cli/services/launch/launch.py:45

high Security checks software File upload conf 1.00 [SEC032] Unrestricted File Upload — no extension/MIME validation: File upload accepts the user's filename without validating extension, content-type, or magic bytes. Attackers upload `.php`, `.jsp`, or executable files to a web-served directory, then visit the URL to trigger RCE. CWE-434. Examples: Apache Struts (CVE-2017-9805), countless WordPress plugin RCEs.

Validate THREE things server-side: 1. Extension allowlist: ALLOWED = {'.png', '.jpg', '.pdf'} ext = Path(file.filename).suffix.lower() if ext not in ALLOWED: abort(400) 2. Magic-byte check (don't trust the extension): import magic mime = magic.from_buffer(file…

src/latch_cli/exceptions/traceback.py:24

high Security checks security Crypto conf 1.00 [SEC113] SSH host-key verification disabled (MITM): Accepting any SSH host key on first connect lets an active MITM impersonate the server. Common in `paramiko.AutoAddPolicy()`.

Python: load `~/.ssh/known_hosts` and use `paramiko.RejectPolicy()`. Go: implement a `ssh.HostKeyCallback` that compares against a known fingerprint. Java JSch: load known_hosts via `jsch.setKnownHosts(...)`.

src/latch_cli/services/k8s/develop.py:154

high Security checks quality Quality conf 1.00 ✓ Repobility 25 occurrences `self.load` used but never assigned in __init__

Method `list_registry_projects` of class `Account` reads `self.load`, but no assignment to it exists in __init__ (and no class-level fallback). This raises AttributeError the first time the method runs against an instance.

4 files, 25 locations

src/latch/registry/table.py:183, 212, 240, 257, 361, 369, 401 (7 hits)

src/latch_sdk_config/user.py:29, 38, 51, 59, 80, 91, 95 (7 hits)

src/latch_cli/tinyrequests.py:28, 54, 55, 57, 59 (6 hits)

src/latch/account.py:173, 201, 334, 336, 366 (5 hits)

high Security checks software dependencies conf 0.88 asyncssh: PYSEC-2023-237

An issue in AsyncSSH v2.14.0 and earlier allows attackers to control the extension info message (RFC 8308) via a man-in-the-middle attack.

uv.lock

high Security checks software dependencies conf 0.88 asyncssh: PYSEC-2023-239

An issue in AsyncSSH v2.14.0 and earlier allows attackers to control the remote end of an SSH client session via packet injection/removal and shell emulation.

uv.lock

high Security checks software dependencies conf 0.88 cryptography: GHSA-r6ph-v2qm-q3c2

cryptography Vulnerable to a Subgroup Attack Due to Missing Subgroup Validation for SECT Curves

uv.lock

high Security checks software dependencies conf 0.88 cryptography: PYSEC-2026-35

cryptography is a package designed to expose cryptographic primitives and recipes to Python developers. Prior to version 46.0.6, DNS name constraints were only validated against SANs within child certificates, and not the "peer name" presented during each validation. Consequently, cryptography woul…

uv.lock

high Security checks software dependencies conf 0.88 cryptography: PYSEC-2026-36

cryptography is a package designed to expose cryptographic primitives and recipes to Python developers. From 45.0.0 to before 46.0.7, if a non-contiguous buffer was passed to APIs which accepted Python buffers (e.g. Hash.update()), this could lead to buffer overflows. This vulnerability is fixed in…

uv.lock

high Security checks cicd CI/CD security conf 0.92 Dockerfile copies the entire context without .dockerignore

COPY . or ADD . sends the full build context to Docker. Without .dockerignore this can include secrets, git history, and local artifacts.

src/latch_cli/services/init/example_snakemake/Dockerfile:19 CI/CD securitycontainers

high Security checks cicd CI/CD security conf 0.92 Dockerfile copies the entire context without .dockerignore

COPY . or ADD . sends the full build context to Docker. Without .dockerignore this can include secrets, git history, and local artifacts.

src/latch_cli/services/init/example_nfcore/Dockerfile:14 CI/CD securitycontainers

high Security checks software dependencies conf 0.90 ✓ Repobility 3 occurrences Dockerfile FROM `alpine:3.12` not pinned by digest

`FROM alpine:3.12` resolves the tag at build time. The registry CAN re-push a different image for the same tag, so every build is potentially different. Production images should pin to `image@sha256:...` for reproducibility + supply-chain integrity.

3 files, 3 locations

Dockerfile.docs:1

src/latch_cli/services/init/example_nfcore/Dockerfile:2

src/latch_cli/services/init/example_snakemake/Dockerfile:1

high Security checks cicd CI/CD security conf 0.92 Dockerfile pipes a remote script into a shell

Piping downloaded code directly into a shell bypasses checksum verification and makes builds dependent on mutable remote content.

src/latch_cli/services/init/example_nfcore/Dockerfile:10 CI/CD securitycontainers

high Security checks software dependencies conf 0.88 gitpython: GHSA-2mqj-m65w-jghx

Untrusted search path under some conditions on Windows allows arbitrary code execution

uv.lock

high Security checks software dependencies conf 0.88 gitpython: GHSA-7545-fcxq-7j24

GitPython reference APIs has a path traversal vulnerability that allows arbitrary file write and delete outside the repository

uv.lock

high Security checks software dependencies conf 0.88 gitpython: GHSA-mv93-w799-cj2w

GitPython: Newline injection in config_writer() section parameter bypasses CVE-2026-42215 patch, enabling RCE via core.hooksPath

uv.lock

high Security checks software dependencies conf 0.88 gitpython: GHSA-v87r-6q3f-2j67

GitPython: Newline injection in config_writer().set_value() enables RCE via core.hooksPath

uv.lock

high Security checks software dependencies conf 0.88 gitpython: GHSA-x2qx-6953-8485

GitPython: Unsafe option check validates multi_options before shlex.split transformation

uv.lock

high Security checks software dependencies conf 0.88 gitpython: PYSEC-2024-4

GitPython is a python library used to interact with Git repositories. There is an incomplete fix for CVE-2023-40590. On Windows, GitPython uses an untrusted search path if it uses a shell to run `git`, as well as when it runs `bash.exe` to interpret hooks. If either of those features are used on Wi…

uv.lock

high Security checks software dependencies conf 0.88 jaraco-context: GHSA-58pv-8j8x-9vj2

jaraco.context Has a Path Traversal Vulnerability

uv.lock

high Security checks software dependencies conf 0.88 orjson: PYSEC-2026-107

The orjson.dumps function in orjson thru 3.11.4 does not limit recursion for deeply nested JSON documents.

uv.lock

high Security checks quality Quality conf 1.00 ✓ Repobility Phantom test coverage: test_data

Test function `test_data` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.

src/latch_cli/main.py:1703

high Security checks quality Quality conf 1.00 ✓ Repobility Phantom test coverage: test_data_ls

Test function `test_data_ls` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.

src/latch_cli/main.py:1749

high Security checks quality Quality conf 1.00 ✓ Repobility Phantom test coverage: test_data_remove

Test function `test_data_remove` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.

src/latch_cli/main.py:1735

high Security checks quality Quality conf 1.00 ✓ Repobility Phantom test coverage: test_data_upload

Test function `test_data_upload` runs code but contains no assert / expect / should call — it passes regardless of behaviour. Adds line coverage without verifying anything.

src/latch_cli/main.py:1720

high Security checks software dependencies conf 0.88 protobuf: GHSA-7gcm-g887-7qv7

protobuf affected by a JSON recursion depth bypass

uv.lock

high Security checks software dependencies conf 0.88 protobuf: GHSA-8qvm-5x2c-j2w7

protobuf-python has a potential Denial of Service issue

uv.lock

high Security checks software dependencies conf 0.88 py: PYSEC-2022-42969

The py library through 1.11.0 for Python allows remote attackers to conduct a ReDoS (Regular expression Denial of Service) attack via a Subversion repository with crafted info data, because the InfoSvnCommand argument is mishandled.

uv.lock

high Security checks software dependencies conf 0.88 pyasn1: GHSA-63vm-454h-vhhq

pyasn1 has a DoS vulnerability in decoder

uv.lock

high Security checks software dependencies conf 0.88 pyasn1: GHSA-jr27-m4p2-rc6r

Denial of Service in pyasn1 via Unbounded Recursion

uv.lock

high Security checks software dependencies conf 0.88 pyjwt: PYSEC-2025-183

pyjwt v2.10.1 was discovered to contain weak encryption. NOTE: this is disputed by the Supplier because the key length is chosen by the application that uses the library (admittedly, library users may benefit from a minimum value and a mechanism for opting in to strict enforcement).

uv.lock

high Security checks software dependencies conf 0.88 pyjwt: PYSEC-2026-120

PyJWT is a JSON Web Token implementation in Python. Prior to 2.12.0, PyJWT does not validate the crit (Critical) Header Parameter defined in RFC 7515 §4.1.11. When a JWS token contains a crit array listing extensions that PyJWT does not understand, the library accepts the token instead of rejecting…

uv.lock

high Security checks software dependencies conf 0.88 pyjwt: PYSEC-2026-175

PyJWT is a JSON Web Token implementation in Python. Prior to 2.13.0, PyJWKClient passes its uri argument directly to urllib.request.urlopen() which uses Python stdlib's default OpenerDirector registering HTTPHandler, HTTPSHandler, FTPHandler, FileHandler, and DataHandler. There is currently no docu…

uv.lock

high Security checks software dependencies conf 0.88 pyjwt: PYSEC-2026-176

PyJWT is a JSON Web Token implementation in Python. From 2.9.0 to 2.12.1, there is a verifier-side algorithm allow-list bypass when jwt.decode() or jwt.decode_complete() are called with a PyJWK key. The token header alg is checked against the caller-supplied algorithms allow-list, but signature ver…

uv.lock

high Security checks software dependencies conf 0.88 pyjwt: PYSEC-2026-177

PyJWT is a JSON Web Token implementation in Python. Prior to 2.13.0, PyJWKClient.get_signing_key() forces a fresh HTTP request to the JWKS endpoint for every JWT with an unknown kid value, with no rate limiting. Since kid comes from the unverified token header, an attacker can trigger unlimited out…

uv.lock

high Security checks software dependencies conf 0.88 pyjwt: PYSEC-2026-178

PyJWT is a JSON Web Token implementation in Python. From 2.8.0 to 2.12.1, when verifying detached JWS tokens using the unencoded-payload option ("b64": false, RFC 7797), PyJWT performs Base64URL decoding of the compact-serialization payload segment before enforcing the detached-payload rules. For b…

uv.lock

high Security checks software dependencies conf 0.88 pyjwt: PYSEC-2026-179

PyJWT is a JSON Web Token implementation in Python. Prior to 2.13.0, when the verifier is decoding JSON Web Tokens, while supporting both asymmetric and HMAC algorithms, the library does not validate use of JSON Web Keys in HMAC algorithm, allowing attacker to use the issuer public key as the secre…

uv.lock

high Security checks software dependencies conf 0.88 urllib3: GHSA-2xpw-w6gg-jr37

urllib3 streaming API improperly handles highly compressed data

uv.lock

high Security checks software dependencies conf 0.88 urllib3: GHSA-38jv-5279-wg99

Decompression-bomb safeguards bypassed when following HTTP redirects (streaming API)

uv.lock

high Security checks software dependencies conf 0.88 urllib3: GHSA-gm62-xv2j-4w53

urllib3 allows an unbounded number of links in the decompression chain

uv.lock

high Security checks software dependencies conf 0.88 urllib3: PYSEC-2026-141

urllib3 is an HTTP client library for Python. From 1.23 to before 2.7.0, cross-origin redirects followed from the low-level API via ProxyManager.connection_from_url().urlopen(..., assert_same_host=False) still forward these sensitive headers. This vulnerability is fixed in 2.7.0.

uv.lock

high Security checks software dependencies conf 0.88 wheel: GHSA-8rrh-rw8j-w5fx

Wheel Affected by Arbitrary File Permission Modification via Path Traversal in wheel unpack

uv.lock

high System graph security Secrets conf 1.00 .env file present in repo: src/latch_cli/services/init/assemble_and_sort/.env

A raw .env file is in the working tree. Verify it isn't committed and that secrets are in a vault.

Config

high System graph hardware Supply chain conf 1.00 Dockerfile pipes a remote installer into a shell

Executing downloaded code during image build gives the remote endpoint build-time code execution. Prefer pinned packages or verify downloaded installers by checksum/signature.

src/latch_cli/services/init/example_nfcore/Dockerfile:10 containersRemote installer

high System graph security security conf 1.00 Insecure pattern 'exec_used' in src/latch_cli/services/launch/launch.py:49

Found a known-risky pattern (exec_used). Review and replace if possible.

src/latch_cli/services/launch/launch.py:49 Exec used

medium Security checks security auth conf 0.92 [AUC001] No Repobility access matrix policy found: The repository uses web/API frameworks but does not define .repobility/access.yml or equivalent authorization documentation.

The repository uses web/API frameworks but does not define .repobility/access.yml or equivalent authorization documentation.

high Security checks security auth conf 0.74 [AUC002] Low visible authorization coverage in route inventory: Only 12.5% of discovered routes show nearby authentication, authorization, middleware, or public-route evidence.

Only 12.5% of discovered routes show nearby authentication, authorization, middleware, or public-route evidence.

low Security checks quality Error handling conf 1.00 [ERR001] Silent Exception Swallowing: Silently swallowing all exceptions hides bugs. Even in cleanup code, log at DEBUG level.

Log the error: `except Exception: logger.debug('cleanup failed', exc_info=True)`. Or handle specific exception types.

src/latch_cli/services/login.py:109

medium Security checks software dependencies conf 0.88 asyncssh: GHSA-hfmc-7525-mj55

AsyncSSH vulnerable to Prefix Truncation Attack (a.k.a. Terrapin Attack) against ChaCha20-Poly1305 and Encrypt-then-MAC

uv.lock

low Security checks quality Error handling conf 0.55 ✓ Repobility 7 occurrences Broad exception handler needs review

This handler catches Exception/BaseException. It is actionable when it swallows errors without logging, re-raising, or returning a structured error. Handlers that intentionally convert exceptions into typed error results should not be treated as high risk.

7 files, 7 locations

src/latch_cli/centromere/ctx.py:167

src/latch_cli/main.py:1678

src/latch_cli/nextflow/config.py:38

src/latch_cli/services/launch/type_converter.py:340

src/latch_cli/services/local_dev_old.py:423

src/latch_cli/utils/__init__.py:259

src/latch_sdk_gql/execute.py:55

Error handlingquality

medium Security checks software dependencies conf 0.88 diskcache: GHSA-w8v5-vhqr-4h9v

DiskCache has unsafe pickle deserialization

uv.lock

medium Security checks cicd CI/CD security conf 0.90 Docker build context has no .dockerignore

Without .dockerignore, build context can include source history, local env files, dependencies, and generated artifacts.

.dockerignore CI/CD securitycontainers

high Security checks cicd CI/CD security conf 0.82 3 occurrences Docker final stage has no non-root USER

Docker images run as root unless the image or Dockerfile switches to a non-root user.

3 files, 3 locations

Dockerfile.docs:1

src/latch_cli/services/init/example_nfcore/Dockerfile:2

src/latch_cli/services/init/example_snakemake/Dockerfile:1

CI/CD securitycontainers

medium Security checks software dependencies conf 0.88 idna: GHSA-65pc-fj4g-8rjx

Internationalized Domain Names in Applications (IDNA): Specially crafted inputs to idna.encode() can bypass CVE-2024-3651 fix

uv.lock

medium Security checks software dependencies conf 0.88 marshmallow: GHSA-428g-f7cq-pgp5

Marshmallow has DoS in Schema.load(many)

uv.lock

medium Security checks quality Quality conf 1.00 ✓ Repobility Mutable default argument in `deseq2_wf` (list)

`def deseq2_wf(... = []/{}/set())` — Python's default value is constructed ONCE at function definition time and shared across all calls. Mutating it in one call mutates it for every future call too.

src/latch/verified/deseq2.py:16

medium Security checks quality Quality conf 1.00 ✓ Repobility 6 occurrences Mutable default argument in `transform_types_in_variable_map` (dict)

`def transform_types_in_variable_map(... = []/{}/set())` — Python's default value is constructed ONCE at function definition time and shared across all calls. Mutating it in one call mutates it for every future call too.

2 files, 6 locations

src/latch_cli/tinyrequests.py:70, 117, 154, 176, 198 (5 hits)

src/latch_cli/snakemake/workflow.py:269

medium Security checks software dependencies conf 0.88 pynacl: GHSA-mrfv-m5wm-5w6w

libsodium has Incomplete List of Disallowed Inputs

uv.lock

medium Security checks software dependencies conf 0.88 pytest: GHSA-6w46-j5rx-g56g

pytest has vulnerable tmpdir handling

uv.lock

medium Security checks software dependencies conf 0.88 requests: GHSA-gc5v-m9x4-r6x2

Requests has Insecure Temp File Reuse in its extract_zipped_paths() utility function

uv.lock

medium Security checks software dependencies conf 0.88 urllib3: GHSA-pq67-6m6q-mj2v

urllib3 redirects are not disabled when retries are disabled on PoolManager instantiation

uv.lock

medium System graph hardware Security conf 1.00 Dockerfile runs as root: src/latch_cli/services/init/example_nfcore/Dockerfile

No non-root USER set. Containers running as root expand the blast radius of any vulnerability inside the image.

Container

medium System graph hardware Security conf 1.00 Dockerfile runs as root: src/latch_cli/services/init/example_snakemake/Dockerfile

No non-root USER set. Containers running as root expand the blast radius of any vulnerability inside the image.

Container

medium System graph security security conf 1.00 Insecure pattern 'subprocess_shell_true' in src/latch_cli/services/init/assemble_and_sort/assemble.py:36

Found a known-risky pattern (subprocess_shell_true). Review and replace if possible.

src/latch_cli/services/init/assemble_and_sort/assemble.py:36 Subprocess shell true

medium System graph security security conf 1.00 Insecure pattern 'subprocess_shell_true' in src/latch_cli/services/init/assemble_and_sort/sort.py:29

Found a known-risky pattern (subprocess_shell_true). Review and replace if possible.

src/latch_cli/services/init/assemble_and_sort/sort.py:29 Subprocess shell true

medium System graph security security conf 1.00 Insecure pattern 'subprocess_shell_true' in src/latch_cli/services/init/init.py:106

Found a known-risky pattern (subprocess_shell_true). Review and replace if possible.

src/latch_cli/services/init/init.py:106 Subprocess shell true

medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — src/latch/functions/messages.py:56

`requests.post(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.

runtime safetyRobustness

medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — src/latch_cli/centromere/ctx.py:348

`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.

runtime safetyRobustness

medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — src/latch_cli/nextflow/forch_register.py:162

`requests.put(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.

runtime safetyRobustness

medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — src/latch_cli/nextflow/workflow.py:59

`requests.post(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.

runtime safetyRobustness

medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — src/latch_cli/services/get.py:51

`requests.post(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.

runtime safetyRobustness

medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — src/latch_cli/services/init/assemble_and_sort/assemble.py:36

`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.

runtime safetyRobustness

medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — src/latch_cli/services/init/assemble_and_sort/sort.py:29

`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.

runtime safetyRobustness

medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — src/latch_cli/services/init/example_conda/conda_task.py:12

`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.

runtime safetyRobustness

medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — src/latch_cli/services/init/example_r/r_task.py:13

`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.

runtime safetyRobustness

medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — src/latch_cli/services/init/init.py:86

`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.

runtime safetyRobustness

medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — src/latch_cli/services/register/utils.py:206

`requests.post(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.

runtime safetyRobustness

medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — src/latch_cli/snakemake/workflow.py:758

`requests.post(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.

runtime safetyRobustness

medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — src/latch_cli/utils/__init__.py:250

`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.

runtime safetyRobustness

medium System graph quality Tests conf 1.00 Very low test-to-source ratio

9 test file(s) for 169 source file(s) (ratio 0.05). Consider adding integration or unit tests for critical paths.

Coverage

low Security checks security auth conf 0.76 [AUC005] No authorization-focused tests detected: No test files with common authorization, ownership, 403, admin, or super_admin assertions were found.

No test files with common authorization, ownership, 403, admin, or super_admin assertions were found.

low Security checks cicd CI/CD security conf 0.72 Dockerfile installs recommended OS packages

Installing recommended packages often pulls in unnecessary runtime surface area.

src/latch_cli/services/init/example_nfcore/Dockerfile:7 CI/CD securitycontainers

high Security checks cicd CI/CD security conf 0.72 Dockerfile keeps pip download cache

Pip's package cache increases image size and can preserve unnecessary artifacts.

src/latch_cli/services/init/example_snakemake/Dockerfile:16 CI/CD securitycontainers

high Security checks cicd CI/CD security conf 0.72 Dockerfile keeps pip download cache

Pip's package cache increases image size and can preserve unnecessary artifacts.

src/latch_cli/services/init/example_nfcore/Dockerfile:3 CI/CD securitycontainers

low Security checks cicd CI/CD security conf 0.74 Dockerfile leaves apt package indexes in the image layer

Package indexes increase image size and can expose stale metadata in the final image layer.

src/latch_cli/services/init/example_nfcore/Dockerfile:7 CI/CD securitycontainers

low Security checks quality Quality conf 0.64 Duplicate top-level symbol appears in a patch-style file

A generated replacement file defining the same public function or class name as another module can mean the new logic is not actually wired into the running code.

src/latch_cli/services/local_dev_old.py:1

low Security checks quality Quality conf 0.60 5 occurrences Duplicated implementation block across source files

Duplicate implementation blocks are maintenance debt. Keep them visible, but they are not a high-severity defect unless the duplicated logic is security-sensitive or drifting.

5 files, 5 locations

src/latch/registry/project.py:194

src/latch/registry/table.py:158

src/latch_cli/services/init/example_r/__init__.py:7

src/latch_cli/services/k8s/execute.py:32

src/latch_cli/services/preview.py:86

duplicationquality

low Security checks software dependencies conf 0.88 paramiko: GHSA-r374-rxx8-8654

Paramiko rsakey.py allows the SHA-1 algorithm

uv.lock

low Security checks software dependencies conf 0.88 pygments: GHSA-5239-wwwm-4pmq

Pygments has Regular Expression Denial of Service (ReDoS) due to Inefficient Regex for GUID Matching

uv.lock

high Security checks quality Quality conf 0.62 Source file name looks like an AI patch artifact

Files named as final, fixed, copy, new, or backup are often temporary patch artifacts. They may be legitimate, but they deserve review before becoming production surface area.

src/latch_cli/services/local_dev_old.py:1

high Security checks quality Quality conf 0.62 Source file name looks like an AI patch artifact

Files named as final, fixed, copy, new, or backup are often temporary patch artifacts. They may be legitimate, but they deserve review before becoming production surface area.

src/latch/ldata/_transfer/remote_copy.py:1

low System graph hardware Coverage conf 1.00 Containers defined but no K8s/orchestration manifest found

Repo has Dockerfiles/compose but no Kubernetes/Nomad manifests. If the target deployment is K8s, the manifests may live in a separate ops repo.

Deployment

low System graph hardware Supply chain conf 1.00 Docker base image is tag-pinned but not digest-pinned: 812206152185.dkr.ecr.us-west-2.amazonaws.com/latch-base:fe0b-main

Container tags can be retagged upstream. Pin production base images to a reviewed digest (`image@sha256:...`) when reproducibility and supply-chain integrity matter.

src/latch_cli/services/init/example_snakemake/Dockerfile:1 containersPinned dependencies

low System graph hardware Supply chain conf 1.00 Docker base image is tag-pinned but not digest-pinned: 812206152185.dkr.ecr.us-west-2.amazonaws.com/latch-base:fe0b-main

Container tags can be retagged upstream. Pin production base images to a reviewed digest (`image@sha256:...`) when reproducibility and supply-chain integrity matter.

src/latch_cli/services/init/example_nfcore/Dockerfile:2 containersPinned dependencies

low System graph software Dead code candidate conf 1.00 File has no detected symbols: docs/source/conf.py

Source file with no class/function declarations — possible config, dead code, or scratch file.

low System graph software Dead code candidate conf 1.00 File has no detected symbols: src/latch/resources/map_tasks.py

Source file with no class/function declarations — possible config, dead code, or scratch file.

low System graph software Dead code candidate conf 1.00 File has no detected symbols: src/latch/types/json.py

Source file with no class/function declarations — possible config, dead code, or scratch file.

low System graph software Dead code candidate conf 1.00 File has no detected symbols: src/latch_cli/exceptions/cache.py

Source file with no class/function declarations — possible config, dead code, or scratch file.

low System graph software Dead code candidate conf 1.00 File has no detected symbols: src/latch_cli/services/init/example_snakemake/latch_metadata.py

Source file with no class/function declarations — possible config, dead code, or scratch file.

low System graph software Dead code candidate conf 1.00 File has no detected symbols: src/latch_cli/services/init/example_snakemake/scripts/plot-quals.py

Source file with no class/function declarations — possible config, dead code, or scratch file.

low System graph software Dead code candidate conf 1.00 File has no detected symbols: src/latch_cli/services/register/constants.py

Source file with no class/function declarations — possible config, dead code, or scratch file.

low System graph software Dead code candidate conf 1.00 File has no detected symbols: src/latch_cli/services/stop_pod.py

Source file with no class/function declarations — possible config, dead code, or scratch file.

low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 10 places

Functions with the same first-5-line body hash: src/latch/idl/core/condition.py:to_idl, src/latch/idl/core/condition.py:to_idl, src/latch/idl/core/condition.py:to_idl, src/latch/idl/core/condition.py:to_idl This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://…

duplicatesduplication

low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 11 places

Functions with the same first-5-line body hash: src/latch/idl/admin/common.py:to_idl, src/latch/idl/admin/common.py:to_idl, src/latch/idl/admin/common.py:to_idl, src/latch/idl/admin/common.py:to_idl This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn/ai…

duplicatesduplication

low System graph quality Integrity conf 1.00 4 occurrences Near-duplicate function bodies in 2 places

Functions with the same first-5-line body hash: src/latch_sdk_config/user.py:token_path, src/latch_sdk_config/user.py:token This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn/ai-code-hygiene). Consolidate or document why they're separate.

4 occurrences

repo-level (4 hits)

duplicatesduplication

low System graph quality Integrity conf 1.00 2 occurrences Near-duplicate function bodies in 22 places

Functions with the same first-5-line body hash: src/latch/idl/core/workflow.py:to_idl, src/latch/idl/core/workflow.py:to_idl, src/latch/idl/core/workflow.py:to_idl, src/latch/idl/core/workflow.py:to_idl This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.h…

2 occurrences

repo-level (2 hits)

duplicatesduplication

low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 26 places

Functions with the same first-5-line body hash: src/latch/idl/core/types.py:to_idl, src/latch/idl/core/types.py:to_idl, src/latch/idl/core/types.py:to_idl, src/latch/idl/core/types.py:to_idl This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn/ai-code-hy…

duplicatesduplication

low System graph quality Integrity conf 1.00 3 occurrences Near-duplicate function bodies in 3 places

Functions with the same first-5-line body hash: src/latch/account.py:list_registry_projects, src/latch/account.py:list_registry_projects, src/latch/account.py:list_registry_projects This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn/ai-code-hygiene). C…

3 occurrences

repo-level (3 hits)

duplicatesduplication

low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 4 places

Functions with the same first-5-line body hash: src/latch/types/plots.py:asdict, src/latch/types/plots.py:asdict, src/latch/types/plots.py:asdict, src/latch/types/plots.py:asdict This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn/ai-code-hygiene). Cons…

duplicatesduplication

low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 48 places

Functions with the same first-5-line body hash: src/latch/idl/core/literals.py:to_idl, src/latch/idl/core/literals.py:to_idl, src/latch/idl/core/literals.py:to_idl, src/latch/idl/core/literals.py:to_idl This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.h…

duplicatesduplication

low System graph quality Integrity conf 1.00 2 occurrences Near-duplicate function bodies in 5 places

Functions with the same first-5-line body hash: src/latch/types/metadata.py:dict, src/latch/types/metadata.py:dict, src/latch/types/metadata.py:dict, src/latch/types/metadata.py:dict This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn/ai-code-hygiene). …

2 occurrences

repo-level (2 hits)

duplicatesduplication

low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 6 places

Functions with the same first-5-line body hash: src/latch/idl/core/execution.py:to_idl, src/latch/idl/core/execution.py:to_idl, src/latch/idl/core/execution.py:to_idl, src/latch/idl/core/execution.py:to_idl This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://…

duplicatesduplication

low System graph quality Integrity conf 1.00 3 occurrences Near-duplicate function bodies in 7 places

Functions with the same first-5-line body hash: src/latch/idl/admin/schedule.py:to_idl, src/latch/idl/admin/schedule.py:to_idl, src/latch/idl/admin/schedule.py:to_idl, src/latch/idl/admin/schedule.py:to_idl This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://…

3 occurrences

repo-level (3 hits)

duplicatesduplication

low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `launch_v2` in src/latch_cli/services/launch/launch.py:16

Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.

old markerDead code

low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `local_dev_old` in src/latch_cli/main.py:545

Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.

old markerDead code

low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `remote_copy` in src/latch/ldata/_transfer/remote_copy.py:12

Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.

old markerDead code

low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `remote_copy` in src/latch/ldata/path.py:29

Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.

old markerDead code

low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `remote_copy` in src/latch_cli/services/cp/main.py:9

Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.

old markerDead code

low System graph software Dead code conf 1.00 Possibly dead Python function: add_execution_results