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thanhuy8888/-n_Systematic-Review-AI

https://github.com/thanhuy8888/-n_Systematic-Review-AI · scanned 2026-06-16 00:33 UTC (2 months, 2 weeks ago)

68 raw signals (0 security + 68 graph)

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UNIFIED Repobility · multi-layer engine · AI coders

Complete repo analysis

Last scanned 2 months, 2 weeks ago · v1 · 60 actionable findings from 1 signal source. 8 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

JSON
Combined
69.4
/100
Security checks
69
0 findings
System graph
69
100.0% cov · 60 findings
Critical
0
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Agents
10
0 votes
Crowd
0
reported
Severity distribution — click a segment to filter
Active filters: excluding tests × Reset all
Severity: Critical 0 High 13 Medium 9 Low 33 9-Layer: Software Security Quality Integrity Frontend Hardware Data Network Cicd Source: Security checks 0 System graph 60 Crowd 0 Layer: Software 5 Frontend 3 Hardware 7 Security 13 Cicd 1 Quality 13 Api 18

All 321 nodes from the latest scan, grouped by kind. Each node is a unit the engine identified (file, function, endpoint, table…). Most users won't need this view — it's primarily for debugging the engine's graph extraction or for AI agents that want to enumerate the project structure.

LabelLayerStatusPath
init_db software healthy apps/api/database.py:10
get_db software dead apps/api/database.py:13
read_root software healthy apps/api/main.py:25
get_screening_board_data software healthy apps/api/routers/screening.py:40
submit_review_action software healthy apps/api/routers/screening.py:92
predict_screening software healthy apps/api/routers/screening.py:124
active_learning_update software dead apps/api/routers/screening.py:159
trigger_retrain software healthy apps/api/routers/screening.py:165
extract_data software healthy apps/api/routers/screening.py:174
parse_pdf_file software healthy apps/api/routers/screening.py:222
delete_paper software healthy apps/api/routers/screening.py:267
upload_files software healthy apps/api/routers/upload.py:20
_insert_papers software healthy apps/api/routers/upload.py:82
persist_extraction software healthy apps/api/routers/review.py:66
_serialize software healthy apps/api/routers/review.py:125
list_extractions software healthy apps/api/routers/review.py:146
get_extraction software healthy apps/api/routers/review.py:181
submit_correction software healthy apps/api/routers/review.py:193
accept_extraction software healthy apps/api/routers/review.py:214
reject_extraction software healthy apps/api/routers/review.py:234
review_queue software healthy apps/api/routers/review.py:258
review_stats software healthy apps/api/routers/review.py:299
addPapers software healthy apps/web/App.tsx:addPapers
start software healthy apps/web/App.tsx:start
handleKeyDown software healthy apps/web/App.tsx:handleKeyDown
goNext software healthy apps/web/App.tsx:goNext
goPrev software healthy apps/web/App.tsx:goPrev
updatePaperStatus software healthy apps/web/App.tsx:updatePaperStatus
handleExclude software healthy apps/web/App.tsx:handleExclude
confirmExclusion software healthy apps/web/App.tsx:confirmExclusion
handleRemovePaper software healthy apps/web/App.tsx:handleRemovePaper
handleBatchAIScreening software healthy apps/web/App.tsx:handleBatchAIScreening
handleExportEvidenceCSV software healthy apps/web/App.tsx:handleExportEvidenceCSV
escape software healthy apps/web/App.tsx:escape
handleImportProject software healthy apps/web/App.tsx:handleImportProject
handleSeedDemoData software healthy apps/web/App.tsx:handleSeedDemoData
handleChange software healthy apps/web/components/CriteriaEditor.tsx:handleChange
handleFiles software healthy apps/web/components/PaperUploader.tsx:handleFiles
openDB software healthy apps/web/services/storageService.ts:openDB
saveProject software healthy apps/web/services/storageService.ts:saveProject
loadProject software healthy apps/web/services/storageService.ts:loadProject
exportProjectFile software healthy apps/web/services/storageService.ts:exportProjectFile
parseRIS software healthy apps/web/services/parsers.ts:parseRIS
parseBIB software healthy apps/web/services/parsers.ts:parseBIB
API_BASE software healthy apps/web/services/mlService.ts:API_BASE
screenPaper software healthy apps/web/services/mlService.ts:screenPaper
extractPaperData software healthy apps/web/services/mlService.ts:extractPaperData
get_label_from_value software dead scripts/ingest_rayyan_data.py:13
process_exported_rayyan_dataset software healthy scripts/ingest_rayyan_data.py:23
_normalize_text software healthy sr_core/ingest/pdf_parser.py:48

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

LabelLayerStatusPath
launch.sh software healthy launch.sh
convert_jsonl_to_project.py software healthy convert_jsonl_to_project.py
README.md software healthy README.md
generate_report_metrics.py software healthy generate_report_metrics.py
Dockerfile software healthy Dockerfile
HUONG_DAN_CHAY_LAI_CHART_CPU.md software healthy HUONG_DAN_CHAY_LAI_CHART_CPU.md
check_db.py software healthy check_db.py
requirements.txt software healthy requirements.txt
docker-compose.yml software healthy docker-compose.yml
database.py software healthy apps/api/database.py
__init__.py software healthy apps/api/__init__.py
models.py software healthy apps/api/models.py
main.py software healthy apps/api/main.py
__init__.py software healthy apps/api/routers/__init__.py
screening.py software healthy apps/api/routers/screening.py
upload.py software healthy apps/api/routers/upload.py
review.py software healthy apps/api/routers/review.py
index.css software healthy apps/web/index.css
vite.config.ts software healthy apps/web/vite.config.ts
README.md software healthy apps/web/README.md
tailwind.config.js software healthy apps/web/tailwind.config.js
package.json software healthy apps/web/package.json
index.html software healthy apps/web/index.html
Dockerfile software healthy apps/web/Dockerfile
index.tsx software healthy apps/web/index.tsx
package-lock.json software healthy apps/web/package-lock.json
tsconfig.json software healthy apps/web/tsconfig.json
App.tsx software healthy apps/web/App.tsx
metadata.json software healthy apps/web/metadata.json
types.ts software healthy apps/web/types.ts
postcss.config.js software healthy apps/web/postcss.config.js
CriteriaEditor.tsx software healthy apps/web/components/CriteriaEditor.tsx
Dashboard.tsx software healthy apps/web/components/Dashboard.tsx
PaperUploader.tsx software healthy apps/web/components/PaperUploader.tsx
prompt_2026-01-29T02_40_17.630Z.json software healthy apps/web/migrated_prompt_history/prompt_2026-01-29T02_40_17…
storageService.ts software healthy apps/web/services/storageService.ts
parsers.ts software healthy apps/web/services/parsers.ts
mlService.ts software healthy apps/web/services/mlService.ts
sample_project.json software healthy apps/web/public/sample_project.json
ingest_rayyan_data.py software healthy scripts/ingest_rayyan_data.py
__init__.py software healthy sr_core/__init__.py
pdf_parser.py software healthy sr_core/ingest/pdf_parser.py
parser.py software healthy sr_core/ingest/parser.py
rayyan_parser.py software healthy sr_core/ingest/rayyan_parser.py
extractive_qa.py software healthy sr_core/extraction/extractive_qa.py
baseline.py software healthy sr_core/screening_model/baseline.py
bm25.py software healthy sr_core/screening_model/bm25.py
transformer_screen.py software healthy sr_core/screening_model/transformer_screen.py
finetuned_meta.json software healthy sr_core/screening_model/finetuned_meta.json
evaluate_transformer.py software healthy experiments/baselines/evaluate_transformer.py

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

LabelLayerStatusPath
Paper software healthy apps/api/models.py:7
ScreeningLabel software healthy apps/api/models.py:24
ReviewAction software healthy apps/api/models.py:36
Extraction software healthy apps/api/models.py:50
Cluster software healthy apps/api/models.py:77
ReviewCriteria software healthy apps/api/routers/screening.py:19
PaperSchema software healthy apps/api/routers/screening.py:26
PredictRequest software healthy apps/api/routers/screening.py:32
ExtractRequest software healthy apps/api/routers/screening.py:36
ExtractionFieldIn software healthy apps/api/routers/review.py:35
PersistRequest software healthy apps/api/routers/review.py:44
CorrectionIn software healthy apps/api/routers/review.py:50
AcceptIn software healthy apps/api/routers/review.py:56
ExtractiveQAPipeline software healthy sr_core/extraction/extractive_qa.py:29
LemmaTokenizer software healthy sr_core/screening_model/baseline.py:15
BaselineModel software healthy sr_core/screening_model/baseline.py:22
BM25Filter software healthy sr_core/screening_model/bm25.py:5
TransformerScreeningModel software healthy sr_core/screening_model/transformer_screen.py:99
_nullcontext software healthy experiments/baselines/train_ensemble_cpu.py:124
DS software healthy experiments/baselines/train_ensemble_cpu.py:169
FocalLoss software healthy experiments/baselines/finetune_pubmedbert.py:132
ScreenDataset software healthy experiments/baselines/finetune_pubmedbert.py:191
ScreenDataset software healthy experiments/baselines/finetune_pubmedbert_cpu.py:214
_nullcontext software healthy experiments/baselines/finetune_pubmedbert_cpu.py:395

LabelLayerStatusPath
apps software healthy apps
api software healthy apps/api
routers software healthy apps/api/routers
web software healthy apps/web
components software healthy apps/web/components
migrated_prompt_history software healthy apps/web/migrated_prompt_history
services software healthy apps/web/services
public software healthy apps/web/public
scripts software healthy scripts
sr_core software healthy sr_core
ingest software healthy sr_core/ingest
extraction software healthy sr_core/extraction
screening_model software healthy sr_core/screening_model
experiments software healthy experiments
baselines software healthy experiments/baselines
results software healthy experiments/results
backup_run3 software healthy experiments/results/backup_run3
backup_run1 software healthy experiments/results/backup_run1
backup_colab_B software healthy experiments/results/backup_colab_B
backup_colab_A software healthy experiments/results/backup_colab_A
backup_run2 software healthy experiments/results/backup_run2
Document software healthy Document

LabelLayerStatusPath
GET / api healthy apps/api/main.py
POST /{paper_id}/action api healthy apps/api/routers/screening.py
POST /predict api healthy apps/api/routers/screening.py
POST /retrain api healthy apps/api/routers/screening.py
POST /extract api healthy apps/api/routers/screening.py
POST /parse_pdf api healthy apps/api/routers/screening.py
DELETE /{paper_id} api healthy apps/api/routers/screening.py
POST / api healthy apps/api/routers/upload.py
POST /extractions/persist api healthy apps/api/routers/review.py
GET /extractions api healthy apps/api/routers/review.py
GET /extractions/{extraction_id} api healthy apps/api/routers/review.py
PATCH /extractions/{extraction_id} api healthy apps/api/routers/review.py
POST /extractions/{extraction_id}/accept api healthy apps/api/routers/review.py
POST /extractions/{extraction_id}/reject api healthy apps/api/routers/review.py
GET /queue api healthy apps/api/routers/review.py
GET /stats api healthy apps/api/routers/review.py

LabelLayerStatusPath
Paper data healthy apps/api/models.py
ScreeningLabel data healthy apps/api/models.py
ReviewAction data healthy apps/api/models.py
Extraction data healthy apps/api/models.py
Cluster data healthy apps/api/models.py
papers data healthy apps/api/models.py
screening_labels data healthy apps/api/models.py
review_actions data healthy apps/api/models.py
extractions data healthy apps/api/models.py
clusters data healthy apps/api/models.py

LabelLayerStatusPath
image::Dockerfile hardware healthy Dockerfile
image::apps/web/Dockerfile hardware healthy apps/web/Dockerfile
backend hardware healthy docker-compose.yml
frontend hardware healthy docker-compose.yml

LabelLayerStatusPath
App frontend healthy apps/web/App.tsx
CriteriaEditor frontend healthy apps/web/components/CriteriaEditor.tsx
Dashboard frontend healthy apps/web/components/Dashboard.tsx
PaperUploader frontend healthy apps/web/components/PaperUploader.tsx

LabelLayerStatusPath
port:8000 network healthy Dockerfile
port:80 network healthy docker-compose.yml
port:3000 network healthy apps/web/vite.config.ts

LabelLayerStatusPath
repobility-clone-mk9ps126 software healthy /tmp/repobility-clone-mk9ps126

LabelLayerStatusPath
sqlite data healthy Dockerfile

LabelLayerStatusPath
nginx network healthy docker-compose.yml

LabelLayerStatusPath
gpu (detected) hardware healthy sr_core/extraction/extractive_qa.py
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