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vfd-org/vfd-crystallisation

https://github.com/vfd-org/vfd-crystallisation · scanned 2026-06-16 00:50 UTC (2 months, 1 week ago)

179 raw signals (0 security + 179 graph)

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UNIFIED Repobility · multi-layer engine · AI coders

Complete repo analysis

Last scanned 2 months, 1 week ago · v1 · 163 actionable findings from 1 signal source. 16 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

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Combined
99.5
/100
Security checks
100
0 findings
System graph
100
66.7% cov · 163 findings
Critical
0
click to filter
Agents
10
0 votes
Crowd
0
reported
Severity distribution — click a segment to filter
Active filters: excluding tests × Reset all
Severity: Critical 0 High 3 Medium 9 Low 46 9-Layer: Software Security Quality Integrity Frontend Hardware Data Network Cicd Source: Security checks 0 System graph 163 Crowd 0 Layer: Software 26 Frontend 1 Security 7 Cicd 1 Quality 128
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Scan summary Repository scanned at 99.5/100 with 66.7% coverage. It contains 6907 nodes across 0 cross-layer flows, written primarily in mixed languages. Engine surfaced 179 findings — concentrated in quality (144), software (26), security (7). Risk profile is high: 0 critical, 3 high, 9 medium. Recommended next step: open the quality layer findings first — that's where the highest-impact wins live.

Showing 58 of 163 actionable findings. 179 raw detector signals were grouped into reader-sized issues. Click TP / FP to vote on a finding's accuracy — votes adjust the confidence weighting and improve detection across the platform.

high System graph security security conf 1.00 Insecure pattern 'eval_used' in papers/paper-xxii/scripts/run_alpha_derivation.py:75
Found a known-risky pattern (eval_used). Review and replace if possible.
papers/paper-xxii/scripts/run_alpha_derivation.py:75 Eval used
high System graph security security conf 1.00 Insecure pattern 'eval_used' in papers/paper-xxii/scripts/run_remaining_gaps.py:275
Found a known-risky pattern (eval_used). Review and replace if possible.
papers/paper-xxii/scripts/run_remaining_gaps.py:275 Eval used
high System graph security security conf 1.00 Insecure pattern 'exec_used' in release-bundles/fractal-tiling-theorem/icosian_brandt_cuspidal_geometry/route_b/genus2_form_level61.py:3
Found a known-risky pattern (exec_used). Review and replace if possible.
release-bundles/fractal-tiling-theorem/icosian_brandt_cuspidal_geometry/route_b/genus2_form_level61.py:3 Exec used
medium System graph quality Placeholder conf 1.00 Critical user flow still appears backed by mock or placeholder data
A payment/auth/admin/order/billing-style flow contains mock, fake, TODO, dummy, or placeholder markers in runtime source. In the Fable corpus this is a high-leverage completeness smell: the app can look finished while the money, identity, or tenant flow is still scaffolded.
Mock dataCritical flowGenerated repo pattern
medium System graph security security conf 1.00 Insecure pattern 'direct_innerhtml_assignment' in campaign/output/pages/resonance-simulator.html:404
Found a known-risky pattern (direct_innerhtml_assignment). Review and replace if possible.
campaign/output/pages/resonance-simulator.html:404 Direct innerhtml assignment
medium System graph security security conf 1.00 Insecure pattern 'direct_innerhtml_assignment' in release-bundles/closure-positivity-lab/explorables/gap-slider.html:87
Found a known-risky pattern (direct_innerhtml_assignment). Review and replace if possible.
release-bundles/closure-positivity-lab/explorables/gap-slider.html:87 Direct innerhtml assignment
medium System graph security security conf 1.00 Insecure pattern 'direct_innerhtml_assignment' in release-bundles/closure-positivity-lab/explorables/residue-wheels.html:181
Found a known-risky pattern (direct_innerhtml_assignment). Review and replace if possible.
release-bundles/closure-positivity-lab/explorables/residue-wheels.html:181 Direct innerhtml assignment
medium System graph quality Integrity conf 1.00 Network/subprocess call without timeout or try/except — campaign/run_weekly.py:34
`subprocess.run(...)` here lacks both a `timeout=` arg and an enclosing try/except. This is exactly the class of bug that took down our git-clone earlier (HTTP/2 stream cancel surfaced as a fatal). Add a `timeout=` and wrap in try/except, or use a wrapper that retries.
runtime safetyRobustness
medium System graph security Coverage conf 1.00 No auth library detected
The scanner did not find any standard auth library (JWT, OAuth, NextAuth, Auth0, etc.). The repo has auth/admin/session surface indicators, so auth may live in custom code, in a separate service, or be missing.
auth
medium System graph cicd CI/CD security conf 1.00 No CI/CD pipelines detected
No GitHub Actions, GitLab CI, or CircleCI configs found. Without CI you can't gate deploys on tests/lints.
CI/CD securityCoverage
medium System graph quality Placeholder conf 1.00 Placeholder or mock-heavy implementation detected
Found 58 placeholder/mock markers across 31 source files. This often means the repo looks complete while core flows still use generated scaffolding or fake data.
Mock dataIncompleteGenerated repo pattern
medium System graph quality Tests conf 1.00 Very low test-to-source ratio
51 test file(s) for 600 source file(s) (ratio 0.09). Consider adding integration or unit tests for critical paths.
Coverage
low System graph quality Debug conf 1.00 Debug logging residue appears in source files
Found 16808 console/debugger/print-style debug statements in non-test source. This is a common fast-generation residue before production cleanup.
CleanupRepo hardeningGenerated repo pattern
low System graph quality Integrity conf 1.00 11 occurrences Near-duplicate function bodies in 2 places
Functions with the same first-5-line body hash: scripts/verify_kappa_descent.py:verify_E_D_fixed_point, scripts/verify_kappa_descent.py:verify This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn/ai-code-hygiene). Consolidate or document why they're sepa…
11 occurrences
repo-level (11 hits)
duplicatesduplication
low System graph quality Integrity conf 1.00 7 occurrences Near-duplicate function bodies in 3 places
Functions with the same first-5-line body hash: scripts/verify_sm_structure.py:check, scripts/verify_crystal_forcing.py:check, scripts/verify_rendering_layer.py:check This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn/ai-code-hygiene). Consolidate or d…
7 occurrences
repo-level (7 hits)
duplicatesduplication
low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 5 places
Functions with the same first-5-line body hash: papers/tau-sigma-construction/verify.py:assert_log, papers/bekenstein-incidence/verify.py:assert_log, papers/v600-cosmic-tensions/verify.py:assert_log, papers/v600-unified/verify.py:assert_log This is *the* AI-coder failure mode (4× more duplication …
duplicatesduplication
low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 7 places
Functions with the same first-5-line body hash: papers/paper-xxii/scripts/run_su5_branching.py:generate_600cell, papers/paper-xxii/scripts/run_first_principles_234.py:generate_600cell, papers/paper-xxii/scripts/run_medium_gaps.py:generate_600cell, papers/paper-xxii/scripts/run_alpha_oneloop.py:gene…
duplicatesduplication
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `api_v1` in papers/biology-rung/scripts/wo1_viperdb_fetch.py:35
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `engine_v2` in release-bundles/fractal-tiling-theorem/vfd_math_engine/aria_learner.py:11
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `engine_v2` in release-bundles/fractal-tiling-theorem/vfd_math_engine/engine_v3.py:10
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `engine_v2` in release-bundles/fractal-tiling-theorem/vfd_math_engine/grow_atlas.py:5
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `engine_v2` in release-bundles/fractal-tiling-theorem/vfd_math_engine/run_programme.py:6
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `generate_book_figures_v2` in scripts/generate_book_figures_v2.py:17
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `probe_icosian_full_generation_v2` in papers/closure-prime-statistics-probe/repro/probe_icosian_full_generation_v2.py:16
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `search_two_vertex_v2` in papers/closure-prime-statistics-probe/repro/probe_icosian_full_generation.py:165
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `vfd_field_v1` in papers/cascade-derivation/scripts/test_vfd_rh_field_variants.py:42
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph software Dead code conf 1.00 Possibly dead Python function: cell5
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/paper-v/scripts/run_polytope_uniqueness.py:128
low System graph software Dead code conf 1.00 Possibly dead Python function: cell8
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/paper-v/scripts/run_polytope_uniqueness.py:137
low System graph software Dead code conf 1.00 Possibly dead Python function: cheb_u
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
scripts/verify_rung_dimension_ladder.py:109
low System graph software Dead code conf 1.00 Possibly dead Python function: cheb_u
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
scripts/verify_ladder_completion.py:77
low System graph software Dead code conf 1.00 Possibly dead Python function: degree_weighted
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/composition-rule/scripts/evaluate_composition_rules.py:344
low System graph software Dead code conf 1.00 Possibly dead Python function: eightcell
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/paper-v/scripts/run_polytope_uniqueness_narrow.py:179
low System graph software Dead code conf 1.00 Possibly dead Python function: fivecell
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/paper-v/scripts/run_polytope_uniqueness_narrow.py:166
low System graph software Dead code conf 1.00 Possibly dead Python function: geometric_mean
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/composition-rule/scripts/evaluate_composition_rules.py:295
low System graph software Dead code conf 1.00 Possibly dead Python function: integrand
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/paper-xxii/scripts/run_first_principles_234.py:187
low System graph software Dead code conf 1.00 Possibly dead Python function: integrand_nn
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/paper-xxii/scripts/run_first_principles_234.py:228
low System graph software Dead code conf 1.00 Possibly dead Python function: integrand_nnn
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/paper-xxii/scripts/run_first_principles_234.py:221
low System graph software Dead code conf 1.00 Possibly dead Python function: oconj
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
scripts/verify_ladder_completion.py:142
low System graph software Dead code conf 1.00 Possibly dead Python function: onehundredtwentycell
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/paper-v/scripts/run_polytope_uniqueness_narrow.py:218
low System graph software Dead code conf 1.00 Possibly dead Python function: path_normalized
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/composition-rule/scripts/evaluate_composition_rules.py:278
low System graph software Dead code conf 1.00 Possibly dead Python function: q_half
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/paper-xxii/scripts/run_icosian_exact.py:58
low System graph software Dead code conf 1.00 Possibly dead Python function: quat
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/paper-xxii/scripts/run_icosian_exact.py:82
low System graph software Dead code conf 1.00 Possibly dead Python function: sixhundredcell
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/paper-v/scripts/run_polytope_uniqueness_narrow.py:212
low System graph software Dead code conf 1.00 Possibly dead Python function: sixteencell
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/paper-v/scripts/run_polytope_uniqueness_narrow.py:184
low System graph software Dead code conf 1.00 Possibly dead Python function: spanning_tree_weight
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/composition-rule/scripts/evaluate_composition_rules.py:377
low System graph software Dead code conf 1.00 Possibly dead Python function: subclosure_rule
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/composition-rule/scripts/evaluate_composition_rules.py:319
low System graph software Dead code conf 1.00 Possibly dead Python function: twentyfourcell
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/paper-v/scripts/run_polytope_uniqueness_narrow.py:195
low System graph software Dead code conf 1.00 Possibly dead Python function: verify_action_preserves_shells
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/paper-xxii/scripts/run_icosian_verification.py:184
low System graph software Dead code conf 1.00 Possibly dead Python function: verify_E_D_fixed_point
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
scripts/verify_kappa_descent.py:165
low System graph software Dead code conf 1.00 Possibly dead Python function: vertex_edge_normalized
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/composition-rule/scripts/evaluate_composition_rules.py:260
low System graph software Dead code conf 1.00 Possibly dead Python function: vint3
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/cascade-derivation/scripts/verify_h_grad_1_b3.py:56
low System graph software Dead code conf 1.00 Possibly dead Python function: zphi_pair_sub
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
papers/cascade-derivation/scripts/derive_pentagonal_clock_B8p_B9.py:89
low System graph quality Provenance conf 1.00 Shallow git history limits provenance confidence
The repository is a shallow clone. Origin/evolution analysis cannot distinguish fresh generation, imported legacy code, or long-lived human code with high confidence.
Git historyGenerated repo pattern
low System graph quality Complexity conf 1.00 Very large file: papers/hypersphere-universe/verify/verify_paper.py (2987 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: papers/life-as-closure/repro/life_demo.py (1622 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: release-bundles/existence-life-closure-programme/papers/II-life-as-closure/repro/life_demo.py (1622 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: release-bundles/existence-programme/papers/02-life-as-closure/repro/life_demo.py (1622 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
low System graph quality Complexity conf 1.00 Very large file: release-bundles/existence-programme/sims/life-as-closure/life_demo.py (1622 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
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