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CliMA/Oceananigans.jl

https://github.com/CliMA/Oceananigans.jl · scanned 2026-06-17 01:23 UTC (1 month, 2 weeks ago)

20 raw signals (0 security + 20 graph)

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Complete repo analysis

Last scanned 1 month, 2 weeks ago · v2 · last Δ -3.5 (diff) · 19 actionable findings from 1 signal source. 1 repeated signal grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

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77.8% cov · 19 findings

Severity distribution — click a segment to filter

Active filters: excluding tests × Reset all

Severity: Critical 0 High 0 Medium 12 Low 7 9-Layer: Software Security Quality Integrity Frontend Hardware Data Network Cicd Source: Security checks 0 System graph 19 Crowd 0 Layer: Software 3 Network 1 Hardware 2 Security 1 Cicd 2 Quality 10

Exclude dismissed / FP Exclude test files

All 176 nodes from the latest scan, grouped by kind. Each node is a unit the engine identified (file, function, endpoint, table…). Most users won't need this view — it's primarily for debugging the engine's graph extraction or for AI agents that want to enumerate the project structure.

Label	Layer	Status	Path
`AGENTS.md`	software	healthy	`AGENTS.md`
`Project.toml`	software	healthy	`Project.toml`
`CONTRIBUTING.md`	software	healthy	`CONTRIBUTING.md`
`README.md`	software	healthy	`README.md`
`LICENSE`	software	healthy	`LICENSE`
`.pre-commit-config.yaml`	software	healthy	`.pre-commit-config.yaml`
`codecov.yml`	software	healthy	`codecov.yml`
`Dockerfile`	software	healthy	`Dockerfile`
`dependabot.yml`	software	healthy	`.github/dependabot.yml`
`pull_request_template.md`	software	healthy	`.github/pull_request_template.md`
`Whitespace.yml`	software	healthy	`.github/workflows/Whitespace.yml`
`TagBot.yml`	software	healthy	`.github/workflows/TagBot.yml`
`publish-benchmarks.yml`	software	healthy	`.github/workflows/publish-benchmarks.yml`
`ci.yml`	software	healthy	`.github/workflows/ci.yml`
`dependency_checks.yml`	software	healthy	`.github/workflows/dependency_checks.yml`
`pipeline.yml`	software	healthy	`.buildkite/pipeline.yml`
`pipeline-benchmarks.yml`	software	healthy	`.buildkite/pipeline-benchmarks.yml`
`pipeline-juliagpu.yml`	software	healthy	`.buildkite/pipeline-juliagpu.yml`
`pipeline.yml`	software	healthy	`.buildkite/distributed/pipeline.yml`
`README.md`	software	healthy	`src/Operators/README.md`
`Project.toml`	software	healthy	`benchmarking/Project.toml`
`Project.toml`	software	healthy	`docs/Project.toml`
`package.json`	software	healthy	`docs/package.json`
`operations.md`	software	healthy	`docs/src/operations.md`
`quick_start.md`	software	healthy	`docs/src/quick_start.md`
`grids.md`	software	healthy	`docs/src/grids.md`
`index.md`	software	healthy	`docs/src/index.md`
`gallery.md`	software	healthy	`docs/src/gallery.md`
`references.md`	software	healthy	`docs/src/references.md`
`fields.md`	software	healthy	`docs/src/fields.md`
`units.md`	software	healthy	`docs/src/units.md`
`simulation_tips.md`	software	healthy	`docs/src/simulation_tips.md`
`field_time_series.md`	software	healthy	`docs/src/field_time_series.md`
`turbulence_closures.md`	software	healthy	`docs/src/developer_docs/turbulence_closures.md`
`model_interface.md`	software	healthy	`docs/src/developer_docs/model_interface.md`
`contributing.md`	software	healthy	`docs/src/developer_docs/contributing.md`
`buoyancy_and_equations_of_state.md`	software	healthy	`docs/src/physics/buoyancy_and_equations_of_state.md`
`nonhydrostatic_model.md`	software	healthy	`docs/src/physics/nonhydrostatic_model.md`
`coriolis_forces.md`	software	healthy	`docs/src/physics/coriolis_forces.md`
`turbulence_closures.md`	software	healthy	`docs/src/physics/turbulence_closures.md`
`shallow_water_model.md`	software	healthy	`docs/src/physics/shallow_water_model.md`
`boussinesq.md`	software	healthy	`docs/src/physics/boussinesq.md`
`hydrostatic_free_surface_model.md`	software	healthy	`docs/src/physics/hydrostatic_free_surface_model.md`
`boundary_conditions.md`	software	healthy	`docs/src/physics/boundary_conditions.md`
`surface_gravity_waves.md`	software	healthy	`docs/src/physics/surface_gravity_waves.md`
`coordinate_systems.md`	software	healthy	`docs/src/physics/coordinate_systems.md`
`stokes_drift.md`	software	healthy	`docs/src/models/stokes_drift.md`
`buoyancy_and_equation_of_state.md`	software	healthy	`docs/src/models/buoyancy_and_equation_of_state.md`
`turbulence_closures.md`	software	healthy	`docs/src/models/turbulence_closures.md`
`background_fields.md`	software	healthy	`docs/src/models/background_fields.md`

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

Label	Layer	Status	Path
`.github`	software	healthy	`.github`
`workflows`	software	healthy	`.github/workflows`
`.buildkite`	software	healthy	`.buildkite`
`distributed`	software	healthy	`.buildkite/distributed`
`src`	software	healthy	`src`
`Operators`	software	healthy	`src/Operators`
`benchmarking`	software	healthy	`benchmarking`
`docs`	software	healthy	`docs`
`src`	software	healthy	`docs/src`
`developer_docs`	software	healthy	`docs/src/developer_docs`
`physics`	software	healthy	`docs/src/physics`
`models`	software	healthy	`docs/src/models`
`simulations`	software	healthy	`docs/src/simulations`
`numerical_implementation`	software	healthy	`docs/src/numerical_implementation`
`appendix`	software	healthy	`docs/src/appendix`
`assets`	software	healthy	`docs/src/assets`
`validation`	software	healthy	`validation`
`stommel_gyre`	software	healthy	`validation/stommel_gyre`
`lid_driven_cavity`	software	healthy	`validation/lid_driven_cavity`
`distributed_simulations`	software	healthy	`validation/distributed_simulations`
`distributed_scaling`	software	healthy	`validation/distributed_simulations/distributed_scaling`
`orthogonal_spherical_shell_grid`	software	healthy	`validation/orthogonal_spherical_shell_grid`
`stokes_drift`	software	healthy	`validation/stokes_drift`
`convergence_tests`	software	healthy	`validation/convergence_tests`
`thermal_bubble`	software	healthy	`validation/thermal_bubble`
`test`	software	healthy	`test`
`.claude`	software	healthy	`.claude`
`rules`	software	healthy	`.claude/rules`
`skills`	software	healthy	`.claude/skills`

Label	Layer	Status	Path
`whitespace`	cicd	healthy	`.github/workflows/Whitespace.yml`
`TagBot`	cicd	healthy	`.github/workflows/TagBot.yml`
`publish-benchmarks`	cicd	healthy	`.github/workflows/publish-benchmarks.yml`
`sharding_tests`	cicd	healthy	`.github/workflows/ci.yml`
`mpi_tripolar`	cicd	healthy	`.github/workflows/ci.yml`
`distributed_output`	cicd	healthy	`.github/workflows/ci.yml`
`makie_ext`	cicd	healthy	`.github/workflows/ci.yml`
`reactant`	cicd	healthy	`.github/workflows/ci.yml`
`reactant_1`	cicd	healthy	`.github/workflows/ci.yml`
`reactant_2`	cicd	healthy	`.github/workflows/ci.yml`
`reactant_3`	cicd	healthy	`.github/workflows/ci.yml`
`metal`	cicd	healthy	`.github/workflows/ci.yml`
`check_minimum_version`	cicd	healthy	`.github/workflows/dependency_checks.yml`
`resolve_dependencies`	cicd	healthy	`.github/workflows/dependency_checks.yml`

Label	Layer	Status	Path
`gha::Whitespace`	cicd	healthy	`.github/workflows/Whitespace.yml`
`gha::TagBot`	cicd	healthy	`.github/workflows/TagBot.yml`
`gha::publish-benchmarks`	cicd	healthy	`.github/workflows/publish-benchmarks.yml`
`gha::ci`	cicd	healthy	`.github/workflows/ci.yml`
`gha::dependency_checks`	cicd	healthy	`.github/workflows/dependency_checks.yml`

Label	Layer	Status	Path
`TEST_GROUP`	cicd	healthy	`—`
`BENCHMARKS_TOKEN`	cicd	healthy	`—`
`BUILDKITE_TOKEN`	cicd	healthy	`—`
`CODECOV_TOKEN`	cicd	healthy	`—`
`GITHUB_TOKEN`	cicd	healthy	`—`

Label	Layer	Status	Path
`plot_tracer_advection_2d_frame`	software	dead	`validation/stommel_gyre/plot_stommel_gyre_advection.py:13`
`plot_lid_driven_cavity_frame`	software	dead	`validation/lid_driven_cavity/plot_lid_driven_cavity.py:54`
`plot_tracer_advection_2d_frame`	software	dead	`validation/thermal_bubble/plot_thermal_bubble_advection.py:…`

Label	Layer	Status	Path
`CliMA__Oceananigans.jl`	software	healthy	`/data/fable5_failed_archive/CliMA__Oceananigans.jl`

Label	Layer	Status	Path
`sqlite`	data	healthy	`.buildkite/pipeline-benchmarks.yml`

Label	Layer	Status	Path
`port:24`	network	healthy	`validation/distributed_simulations/distributed_scaling/job_…`

Label	Layer	Status	Path
`image::Dockerfile`	hardware	healthy	`Dockerfile`

Label	Layer	Status	Path
`gpu (detected)`	hardware	healthy	`AGENTS.md`

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CliMA/Oceananigans.jl

Complete repo analysis

file 50+

directory 29

job 14

pipeline 5

env_var 5

function 3

repo 1

database 1

port 1

container 1

gpu 1