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Issue title

`self.registrar_config` used but never assigned in __init__

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Pick exactly which findings appear in the issue body. By default the top 5 are included. Uncheck noise, check what matters.

Top 5 (default)
Severity Rule Title File:line
HIGH SEC128 [SEC128] Async function without await — fire-and-forget Promise (AI mistake): Async call … src/specify_cli/authentication/http.py:147
HIGH SEC029 [SEC029] Server-Side Request Forgery (SSRF) — outbound HTTP from user input: Outbound HTT… src/specify_cli/authentication/http.py:174
HIGH MINED108 `self._non_default_catalog_warning_shown` used but never assigned in __init__ src/specify_cli/extensions.py:2017
HIGH MINED108 `self.key` used but never assigned in __init__ src/specify_cli/integrations/base.py:1721
HIGH MINED108 `self.registrar_config` used but never assigned in __init__ src/specify_cli/integrations/base.py:1695
HIGH MINED108 `self.config` used but never assigned in __init__ src/specify_cli/integrations/base.py:1596
HIGH MINED108 `self.config` used but never assigned in __init__ src/specify_cli/integrations/base.py:1591
HIGH MINED108 `self.config` used but never assigned in __init__ src/specify_cli/integrations/base.py:1589
HIGH MINED108 `self.config` used but never assigned in __init__ src/specify_cli/integrations/base.py:1571
HIGH MINED108 `self.context_file` used but never assigned in __init__ src/specify_cli/integrations/base.py:1524
HIGH MINED108 `self.registrar_config` used but never assigned in __init__ src/specify_cli/integrations/base.py:1504
HIGH MINED108 `self.key` used but never assigned in __init__ src/specify_cli/integrations/base.py:1523
HIGH MINED108 `self.registrar_config` used but never assigned in __init__ src/specify_cli/integrations/base.py:1505
HIGH MINED108 `self.context_file` used but never assigned in __init__ src/specify_cli/integrations/base.py:1320
HIGH MINED108 `self.registrar_config` used but never assigned in __init__ src/specify_cli/integrations/base.py:1309
HIGH MINED108 `self.key` used but never assigned in __init__ src/specify_cli/integrations/base.py:1319
HIGH MINED108 `self.registrar_config` used but never assigned in __init__ src/specify_cli/integrations/base.py:1310
HIGH MINED108 `self.config` used but never assigned in __init__ src/specify_cli/integrations/base.py:1152
HIGH MINED108 `self.context_file` used but never assigned in __init__ src/specify_cli/integrations/base.py:1114
HIGH MINED108 `self.registrar_config` used but never assigned in __init__ src/specify_cli/integrations/base.py:1104
HIGH MINED108 `self.key` used but never assigned in __init__ src/specify_cli/integrations/base.py:1113
HIGH MINED108 `self.registrar_config` used but never assigned in __init__ src/specify_cli/integrations/base.py:1105
HIGH MINED108 `self.config` used but never assigned in __init__ src/specify_cli/integrations/base.py:1064
HIGH MINED108 `self._non_default_catalog_warning_shown` used but never assigned in __init__ src/specify_cli/integrations/catalog.py:96
HIGH MINED108 `self._non_default_catalog_warning_shown` used but never assigned in __init__ src/specify_cli/presets.py:2042
HIGH MINED034 [MINED034] Python Subprocess Shell True: subprocess(..., shell=True) enables command inje… src/specify_cli/workflows/steps/shell/_…:33
HIGH MINED034 [MINED034] Python Subprocess Shell True: subprocess(..., shell=True) enables command inje… src/specify_cli/workflows/steps/shell/_…:33
HIGH SEC128 [SEC128] Async function without await — fire-and-forget Promise (AI mistake): Async call … src/specify_cli/workflows/steps/command…:54
HIGH SEC128 [SEC128] Async function without await — fire-and-forget Promise (AI mistake): Async call … src/specify_cli/workflows/steps/command…:54
HIGH SEC029 [SEC029] Server-Side Request Forgery (SSRF) — outbound HTTP from user input: Outbound HTT… src/specify_cli/authentication/azure_de…:112
HIGH SEC029 [SEC029] Server-Side Request Forgery (SSRF) — outbound HTTP from user input: Outbound HTT… src/specify_cli/authentication/azure_de…:112
HIGH MINED006 [MINED006] Overcatch Baseexception: except BaseException: ... — prevents Ctrl+C and Syste… src/specify_cli/workflows/steps/prompt/…:148
HIGH MINED006 [MINED006] Overcatch Baseexception: except BaseException: ... — prevents Ctrl+C and Syste… src/specify_cli/workflows/steps/prompt/…:148
HIGH MINED006 [MINED006] Overcatch Baseexception: except BaseException: ... — prevents Ctrl+C and Syste… src/specify_cli/_console.py:212
HIGH MINED006 [MINED006] Overcatch Baseexception: except BaseException: ... — prevents Ctrl+C and Syste… src/specify_cli/_console.py:212
HIGH MINED001 [MINED001] Bare Except Pass: except: pass or except Exception: pass — silently swallows e… src/specify_cli/integrations/hermes/__i…:134
HIGH MINED001 [MINED001] Bare Except Pass: except: pass or except Exception: pass — silently swallows e… src/specify_cli/integrations/hermes/__i…:134
HIGH MINED001 [MINED001] Bare Except Pass: except: pass or except Exception: pass — silently swallows e… src/specify_cli/authentication/config.py:88
HIGH MINED001 [MINED001] Bare Except Pass: except: pass or except Exception: pass — silently swallows e… src/specify_cli/authentication/config.py:88
HIGH MINED001 [MINED001] Bare Except Pass: except: pass or except Exception: pass — silently swallows e… src/specify_cli/_console.py:82
HIGH MINED001 [MINED001] Bare Except Pass: except: pass or except Exception: pass — silently swallows e… src/specify_cli/_console.py:82
HIGH MINED115 Action `actions/github-script` pinned to mutable ref `@v9` .github/workflows/catalog-assign.yml:22
MED MINED111 Bare except continues silently src/specify_cli/commands/init.py:480
MED MINED111 Bare except continues silently src/specify_cli/__init__.py:234
MED MINED111 Bare except continues silently src/specify_cli/__init__.py:251
MED ERR001 [ERR001] Silent Exception Swallowing: Silently swallowing all exceptions hides bugs. Even… src/specify_cli/_console.py:82
MED ERR001 [ERR001] Silent Exception Swallowing: Silently swallowing all exceptions hides bugs. Even… src/specify_cli/_console.py:82
MED MINED111 Bare except continues silently src/specify_cli/integrations/_migrate_c…:279
MED MINED111 Bare except continues silently src/specify_cli/integrations/_migrate_c…:279
MED MINED111 Bare except continues silently src/specify_cli/integrations/_migrate_c…:178
MED MINED111 Bare except continues silently src/specify_cli/integrations/_migrate_c…:178
MED MINED111 Bare except continues silently src/specify_cli/presets.py:1740
MED MINED111 Bare except continues silently src/specify_cli/presets.py:1740
MED MINED111 Bare except continues silently src/specify_cli/presets.py:1607
MED MINED111 Bare except continues silently src/specify_cli/presets.py:1607
MED COMP001 [COMP001] High cognitive complexity: Function `render` has cognitive complexity 23 (Sonar… src/specify_cli/_console.py:85
MED COMP001 [COMP001] High cognitive complexity: Function `render` has cognitive complexity 23 (Sonar… src/specify_cli/_console.py:85
MED AGT015 Remote install command pipes network code directly to a shell docs/install/uv.md:15
MED AGT015 Remote install command pipes network code directly to a shell docs/install/uv.md:15
MED AGT013 Agent auto-approve or skip-permissions mode is easy to enable src/specify_cli/integrations/copilot/__…:157
MED AGT013 Agent auto-approve or skip-permissions mode is easy to enable src/specify_cli/integrations/copilot/__…:157
MED SEC005 [SEC005] Command Injection Risk: Unsafe shell execution or eval of user input. src/specify_cli/workflows/steps/shell/_…:33
MED SEC005 [SEC005] Command Injection Risk: Unsafe shell execution or eval of user input. src/specify_cli/workflows/steps/shell/_…:33
LOW COMP001 [COMP001] High cognitive complexity: Function `build_github_request` has cognitive comple… src/specify_cli/_github_http.py:28
LOW COMP001 [COMP001] High cognitive complexity: Function `run_selection_loop` has cognitive complexi… src/specify_cli/_console.py:193
LOW COMP001 [COMP001] High cognitive complexity: Function `run_selection_loop` has cognitive complexi… src/specify_cli/_console.py:193
LOW MINED115 Action `actions/github-script` pinned to mutable ref `@v9` .github/workflows/catalog-assign.yml:22
LOW AIC003 Duplicated implementation block across source files src/specify_cli/workflows/steps/prompt/…:59
LOW AIC003 Duplicated implementation block across source files src/specify_cli/workflows/steps/prompt/…:59
LOW AIC003 Duplicated implementation block across source files src/specify_cli/integrations/vibe/__ini…:42
LOW AIC003 Duplicated implementation block across source files src/specify_cli/integrations/vibe/__ini…:42
LOW AIC003 Duplicated implementation block across source files src/specify_cli/integrations/cline/__in…:64
LOW AIC003 Duplicated implementation block across source files src/specify_cli/integrations/cline/__in…:64
LOW AIC003 Duplicated implementation block across source files src/specify_cli/integrations/_migrate_c…:6
LOW AIC003 Duplicated implementation block across source files src/specify_cli/integrations/_migrate_c…:6
INFO MINED043 [MINED043] Http Not Https: Hardcoded http:// (not localhost) for endpoints that handle cr… src/specify_cli/_github_http.py:47
INFO MINED050 [MINED050] Stub Only Function: Function declared but body is just pass, return None, rais… src/specify_cli/_utils.py:116
INFO MINED064 [MINED064] Python Input Call: input() blocks for stdin. Inappropriate in services. src/specify_cli/workflows/steps/gate/__…:131
INFO MINED073 [MINED073] Redos Greedy Quantifier: Pattern with nested quantifiers like (a+)+ applied to… src/specify_cli/integrations/cline/__in…:119
INFO MINED073 [MINED073] Redos Greedy Quantifier: Pattern with nested quantifiers like (a+)+ applied to… src/specify_cli/integrations/cline/__in…:119
INFO MINED062 [MINED062] Python Dataclass No Fields: @dataclass over an empty class — unfinished model. src/specify_cli/integration_state.py:15
INFO MINED062 [MINED062] Python Dataclass No Fields: @dataclass over an empty class — unfinished model. src/specify_cli/integration_state.py:15
INFO MINED062 [MINED062] Python Dataclass No Fields: @dataclass over an empty class — unfinished model. src/specify_cli/catalogs.py:18
INFO MINED062 [MINED062] Python Dataclass No Fields: @dataclass over an empty class — unfinished model. src/specify_cli/catalogs.py:18
INFO MINED062 [MINED062] Python Dataclass No Fields: @dataclass over an empty class — unfinished model. src/specify_cli/authentication/config.py:19
INFO MINED062 [MINED062] Python Dataclass No Fields: @dataclass over an empty class — unfinished model. src/specify_cli/authentication/config.py:19
INFO MINED050 [MINED050] Stub Only Function: Function declared but body is just pass, return None, rais… src/specify_cli/_console.py:83
INFO MINED050 [MINED050] Stub Only Function: Function declared but body is just pass, return None, rais… src/specify_cli/_console.py:83
INFO MINED050 [MINED050] Stub Only Function: Function declared but body is just pass, return None, rais… src/specify_cli/_assets.py:120
INFO MINED050 [MINED050] Stub Only Function: Function declared but body is just pass, return None, rais… src/specify_cli/_assets.py:120
INFO MINED063 [MINED063] Toctou Os Path Exists: if os.path.exists(p): open(p) — file can be replaced/de… extensions/agent-context/scripts/bash/u…:167
INFO MINED063 [MINED063] Toctou Os Path Exists: if os.path.exists(p): open(p) — file can be replaced/de… extensions/agent-context/scripts/bash/u…:167
Reset to top 5 92 findings available (after auto-suppression of test files + won't-fix)

Issue body (markdown)

## Code-quality scan: `github/spec-kit`

**Score: 91/100 (A-)**  ·  72 findings  ·  scanned 2026-06-11 23:26 UTC  ·  69,213 LOC

| Severity | Count |
|---|---|
| CRITICAL | 0 |
| HIGH | 42 |
| MEDIUM | 21 |
| LOW | 12 |

📊 [Full filterable report](https://repobility.com/scan/fd7adca4-f4b6-4783-9a75-00a79d91bfd4/)  ·  ![scorecard](https://repobility.com/scan/fd7adca4-f4b6-4783-9a75-00a79d91bfd4/report.png?v=1781220365-s2)

### Top findings

1. **HIGH** `SEC128` — Async function without await — fire-and-forget Promise (AI mistake)
   `src/specify_cli/authentication/http.py:147`
2. **HIGH** `SEC029` — Server-Side Request Forgery (SSRF) — outbound HTTP from user input
   `src/specify_cli/authentication/http.py:174` · A10:2021 SSRF
3. **HIGH** `MINED108` — `self._non_default_catalog_warning_shown` used but never assigned in __init__
   `src/specify_cli/extensions.py:2017` · ✓ Repobility
4. **HIGH** `MINED108` — `self.key` used but never assigned in __init__
   `src/specify_cli/integrations/base.py:1721` · ✓ Repobility
5. **HIGH** `MINED108` — `self.registrar_config` used but never assigned in __init__
   `src/specify_cli/integrations/base.py:1695` · ✓ Repobility

---

**Security note**: this issue is public. If any flagged finding is a real, exploitable vulnerability, please redirect to your `SECURITY.md` policy or open a [private security advisory](https://docs.github.com/en/code-security/security-advisories/guidance-on-reporting-and-writing-information-about-vulnerabilities/privately-reporting-a-security-vulnerability) instead. We're happy to close this and re-submit privately.

---

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