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LernerLab/GuPPy

https://github.com/LernerLab/GuPPy · scanned 2026-06-05 17:54 UTC (4 days, 20 hours ago) · 10 languages

305 raw signals (115 security + 190 graph) 92nd percentile · Python · medium (20-100K LoC) System graph score 89 (lower by 4)

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UNIFIED Repobility · multi-layer engine · AI coders

Complete repo analysis

Last scanned 4 days, 20 hours ago · v2 · 128 actionable findings from 2 signal sources. 57 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

JSON
Combined
88.0
/100
Security checks
87
48 findings
System graph
89
77.8% cov · 80 findings
Critical
0
click to filter
Agents
6
0 votes
Crowd
0
reported
Score breakdown â 2026-05-18-v5
Component Sub-score Weight Contribution
structure_score 85.0 0.15 12.75
security_score 91.0 0.25 22.75
testing_score 100.0 0.20 20.00
documentation_score 93.0 0.15 13.95
practices_score 75.0 0.15 11.25
code_quality 39.2 0.10 3.92
Overall 1.00 84.6
Severity distribution — click a segment to filter
Active filters: excluding tests × Reset all
Severity: Critical 0 High 5 Medium 6 Low 67 9-Layer: Software Security Quality Integrity Frontend Hardware Data Network Cicd Source: Security checks 48 System graph 80 Crowd 0 Layer: Quality 95 Security 3 Software 22 Cicd 6 Api 1 Frontend 1
Scan summary Quality grade A- (85/100). Dimensions: security 91, maintainability 85. 115 findings (21 security). 36,517 lines analyzed.

Showing 77 of 128 actionable findings. 185 raw detector signals were grouped into reader-sized issues. Click TP / FP to vote on a finding's accuracy — votes adjust the confidence weighting and improve detection across the platform.

high Security checks quality Quality conf 1.00 ✓ Repobility 7 occurrences Missing import: `signal` used but not imported
The file uses `signal.something(...)` but never imports `signal`. This raises NameError at runtime the first time the line executes.
7 files, 7 locations
src/guppy/analysis/control_channel.py:140
src/guppy/analysis/timestamp_correction.py:294
src/guppy/extractors/dandi_nwb_recording_extractor.py:170
src/guppy/extractors/nwb_recording_extractor.py:395
src/guppy/testing/scripts/create_mock_nwbfile_ndx_fiber_photometry_v0_1_ndx_events_v0_2.py:254
src/guppy/testing/scripts/create_mock_nwbfile_ndx_fiber_photometry_v0_2_ndx_events_v0_2.py:342
src/guppy/testing/scripts/create_mock_nwbfile_ndx_fiber_photometry_v0_2_ndx_events_v0_4.py:348
high Security checks quality Quality conf 1.00 ✓ Repobility [MINED021] Path Traversal Os Join: os.path.join(user_dir, filename) where filename can contain "../" — directory escape.
Review and fix per the pattern semantics. See CWE-22 / A01:2021 for context.
src/guppy/frontend/progress.py:8
high Security checks security path traversal conf 0.80 [SEC013] Path Traversal — User Input in File Path: User-controlled input used in file path without sanitization. Allows reading arbitrary files.
Use os.path.realpath() and verify the path starts with your expected base directory. Use secure_filename() for uploads.
src/guppy/utils/utils.py:34
medium Security checks cicd CI/CD security conf 0.90 ✓ Repobility 10 occurrences GitHub Action is tag-pinned rather than SHA-pinned
Action `tj-actions/changed-files` pinned to mutable ref `@v46.0.1` uses a mutable tag or branch. Pin external actions to a reviewed full commit SHA when the workflow is security-sensitive.
6 files, 10 locations
.github/workflows/auto-publish.yml:34 (2 hits)
.github/workflows/claude.yml:35 (2 hits)
.github/workflows/pr-tests.yml:66 (2 hits)
.github/workflows/run-tests.yml:83 (2 hits)
.github/workflows/assess-file-changes.yml:30
.github/workflows/dailies.yml:36
CI/CD securitySupply chainGitHub Actions
low Security checks cicd CI/CD security conf 0.90 ✓ Repobility 11 occurrences GitHub Action is tag-pinned rather than SHA-pinned
Action `actions/checkout` pinned to mutable ref `@v4` uses a mutable tag or branch. Pin external actions to a reviewed full commit SHA when the workflow is security-sensitive.
6 files, 11 locations
.github/workflows/auto-publish.yml:21, 23 (3 hits)
.github/workflows/run-tests.yml:53, 55 (3 hits)
.github/workflows/claude.yml:29 (2 hits)
.github/workflows/assess-file-changes.yml:24
.github/workflows/dailies.yml:15
.github/workflows/pr-tests.yml:22
CI/CD securitySupply chainGitHub Actions
high Security checks software dependencies conf 0.90 ✓ Repobility 4 occurrences pre-commit hook `https://github.com/pre-commit/pre-commit-hooks` pinned to mutable rev `v6.0.0`
`.pre-commit-config.yaml` references `https://github.com/pre-commit/pre-commit-hooks` at `rev: v6.0.0`. If `{rev}` is a branch or version tag, the repo owner can push new code there and `pre-commit install --install-hooks` will fetch it on every developer's machine.
lines 2, 11, 17, 24
.pre-commit-config.yaml:2, 11, 17, 24 (4 hits)
high System graph cicd CI/CD security conf 1.00 tj-actions/changed-files is tag-pinned instead of SHA-pinned
The tj-actions/changed-files incident showed that mutable action tags can execute credential-stealing code across many repositories. Pin this action to a reviewed commit SHA.
.github/workflows/assess-file-changes.yml:30 CI/CD securitySupply chainGithub actions
low Security checks quality Error handling conf 1.00 [ERR001] Silent Exception Swallowing: Silently swallowing all exceptions hides bugs. Even in cleanup code, log at DEBUG level.
Log the error: `except Exception: logger.debug('cleanup failed', exc_info=True)`. Or handle specific exception types.
src/guppy/extractors/csv_recording_extractor.py:138
low Security checks quality Error handling conf 0.55 ✓ Repobility 6 occurrences Broad exception handler needs review
This handler catches Exception/BaseException. It is actionable when it swallows errors without logging, re-raising, or returning a structured error. Handlers that intentionally convert exceptions into typed error results should not be treated as high risk.
5 files, 6 locations
src/guppy/extractors/doric_recording_extractor.py:83, 241 (2 hits)
src/guppy/analysis/io_utils.py:46
src/guppy/extractors/csv_recording_extractor.py:70
src/guppy/extractors/npm_recording_extractor.py:198
src/guppy/orchestration/home.py:86
Error handlingquality
medium Security checks quality Quality conf 1.00 ✓ Repobility 4 occurrences Mutable default argument in `write_peak_and_area_to_hdf5` (list)
`def write_peak_and_area_to_hdf5(... = []/{}/set())` — Python's default value is constructed ONCE at function definition time and shared across all calls. Mutating it in one call mutates it for every future call too.
lines 612, 636, 657, 685
src/guppy/analysis/standard_io.py:612, 636, 657, 685 (4 hits)
medium System graph cicd CI/CD security conf 1.00 GitHub Actions workflow grants broad write permissions
CI tokens with write permissions increase blast radius when an action, dependency, or PR workflow is compromised. Prefer job-level least-privilege permissions.
.github/workflows/auto-publish.yml CI/CD securitySupply chainGithub actions
medium System graph cicd CI/CD security conf 1.00 GitHub Actions workflow grants broad write permissions
CI tokens with write permissions increase blast radius when an action, dependency, or PR workflow is compromised. Prefer job-level least-privilege permissions.
.github/workflows/claude.yml CI/CD securitySupply chainGithub actions
medium System graph quality Integrity conf 1.00 Likely N+1 query: `for neurodata_object in …` triggers a query per row — src/guppy/extractors/nwb_recording_extractor.py:164
The loop iterates a Django queryset and accesses `neurodata_object.data.shape` per row, which fires an additional database query each iteration. Add `.select_related('<fk_field>')` for FK / O2O relations or `.prefetch_related('<m2m_or_reverse>')` for many-related lookups, to load everything in 1-2 …
src/guppy/extractors/nwb_recording_extractor.py:164 N plus onePerformance
medium System graph security Coverage conf 1.00 No auth library detected
The scanner did not find any standard auth library (JWT, OAuth, NextAuth, Auth0, etc.). Either auth lives in custom code, in a separate service, or is missing.
auth
low Security checks quality Quality conf 0.60 9 occurrences Duplicated implementation block across source files
Duplicate implementation blocks are maintenance debt. Keep them visible, but they are not a high-severity defect unless the duplicated logic is security-sensitive or drifting.
8 files, 9 locations
src/guppy/testing/scripts/create_mock_nwbfile_ndx_fiber_photometry_v0_2_ndx_events_v0_4.py:30, 253 (2 hits)
src/guppy/analysis/standard_io.py:398
src/guppy/extractors/doric_recording_extractor.py:450
src/guppy/extractors/npm_recording_extractor.py:163
src/guppy/extractors/nwb_recording_extractor.py:51
src/guppy/orchestration/preprocess.py:81
src/guppy/orchestration/transients.py:242
src/guppy/testing/scripts/create_mock_nwbfile_ndx_fiber_photometry_v0_2_ndx_events_v0_2.py:244
duplicationquality
low System graph software Dead code candidate conf 1.00 File has no detected symbols: docs/conf.py
Source file with no class/function declarations — possible config, dead code, or scratch file.
low System graph quality Integrity conf 1.00 9 occurrences Near-duplicate function bodies in 2 places
Functions with the same first-5-line body hash: docs/scripts/cross_correlation_explainer.py:jittered_timing_trial, docs/scripts/cross_correlation_explainer.py:jittered_timing_trial This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn/ai-code-hygiene). Co…
9 occurrences
repo-level (9 hits)
duplicatesduplication
low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 3 places
Functions with the same first-5-line body hash: docs/scripts/isosbestic_explainer.py:split_normal, docs/scripts/isosbestic_explainer.py:split_normal, docs/scripts/isosbestic_explainer.py:split_normal This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn/a…
duplicatesduplication
low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 4 places
Functions with the same first-5-line body hash: src/guppy/testing/api.py:step3, src/guppy/testing/api.py:step4, src/guppy/testing/api.py:step5, src/guppy/testing/api.py:step6 This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn/ai-code-hygiene). Consolid…
duplicatesduplication
low System graph quality Integrity conf 1.00 Near-duplicate function bodies in 5 places
Functions with the same first-5-line body hash: docs/scripts/isosbestic_explainer.py:calcium_event, docs/scripts/isosbestic_explainer.py:calcium_event, docs/scripts/isosbestic_explainer.py:calcium_event, docs/scripts/isosbestic_explainer.py:calcium_event This is *the* AI-coder failure mode (4× mor…
duplicatesduplication
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `_stub_doric_hdf5_v1` in src/guppy/extractors/doric_recording_extractor.py:533
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `csv_session_copy` in tests/integration/test_integration_parametrized_outputs.py:26
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `data_np_v2` in src/guppy/extractors/npm_recording_extractor.py:304
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `data_np_v2` in src/guppy/orchestration/storenames.py:290
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `data_np_v2` in tests/unit/extractors/test_npm_recording_extractor.py:68
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `doric_v1` in tests/unit/extractors/test_doric_recording_extractor.py:38
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/consistency/test_consistency_artifact_removal.py:90
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/consistency/test_consistency_combined_data.py:52
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/consistency/test_consistency_csv.py:52
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/consistency/test_consistency_dff.py:38
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/consistency/test_consistency_doric.py:98
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/consistency/test_consistency_group_analysis.py:51
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/consistency/test_consistency_no_isosbestic.py:40
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/consistency/test_consistency_npm.py:93
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/consistency/test_consistency_tdt.py:73
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/consistency/test_consistency_zscore_method.py:57
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/conftest.py:77
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_artifact_removal.py:75
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_bin_psth_trials.py:36
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_build_event_to_extractor.py:52
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_combine_data.py:45
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_cross_correlation.py:50
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_dandi.py:66
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_dff.py:34
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_group_analysis.py:44
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_inter_session_mixed_modality.py:52
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_intra_session_mixed_modality.py:18
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_no_isosbestic.py:37
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_npm_params_persistence.py:22
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_parallel.py:41
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_step2.py:186
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_step2_idempotent.py:33
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_step3.py:70
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_step5.py:47
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_step6.py:90
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/integration/test_integration_zscore_method.py:45
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `session_copy` in tests/unit/extractors/test_detect_acquisition_formats.py:152
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph software Dead code conf 1.00 Possibly dead Python function: bimodal_timing_trial
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
docs/scripts/cross_correlation_explainer.py:337
low System graph software Dead code conf 1.00 Possibly dead Python function: callback
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
src/guppy/frontend/storenames_selector.py:119
low System graph software Dead code conf 1.00 Possibly dead Python function: consistent_timing_trial
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
docs/scripts/cross_correlation_explainer.py:275
low System graph software Dead code conf 1.00 Possibly dead Python function: fetchValues
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
src/guppy/orchestration/storenames.py:347
low System graph software Dead code conf 1.00 Possibly dead Python function: figure_1_response_vs_wavelength
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
docs/scripts/isosbestic_explainer.py:106
low System graph software Dead code conf 1.00 Possibly dead Python function: figure_1_unified_decomposition
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
docs/scripts/isosbestic_explainer.py:563
low System graph software Dead code conf 1.00 Possibly dead Python function: figure_2_excitation_spectra
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
docs/scripts/isosbestic_explainer.py:1422
low System graph software Dead code conf 1.00 Possibly dead Python function: figure_3_contribution_decomposition
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
docs/scripts/isosbestic_explainer.py:1510
low System graph software Dead code conf 1.00 Possibly dead Python function: independent_bumps_trial
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
docs/scripts/cross_correlation_explainer.py:306
low System graph software Dead code conf 1.00 Possibly dead Python function: jittered_timing_trial
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
docs/scripts/cross_correlation_explainer.py:330
low System graph software Dead code conf 1.00 Possibly dead Python function: onclickpreprocess
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
src/guppy/orchestration/home.py:126
low System graph software Dead code conf 1.00 Possibly dead Python function: onclickpsth
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
src/guppy/orchestration/home.py:137
low System graph software Dead code conf 1.00 Possibly dead Python function: onclickreaddata
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
src/guppy/orchestration/home.py:115
low System graph software Dead code conf 1.00 Possibly dead Python function: onclickStorenames
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
src/guppy/orchestration/home.py:96
low System graph software Dead code conf 1.00 Possibly dead Python function: psthComputation
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
src/guppy/orchestration/home.py:44
low System graph software Dead code conf 1.00 Possibly dead Python function: readRawData
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
src/guppy/orchestration/home.py:20
low System graph software Dead code conf 1.00 Possibly dead Python function: remember_then_call
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
src/guppy/frontend/storenames_selector.py:245
low System graph software Dead code conf 1.00 Possibly dead Python function: run_name_input_changed
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
src/guppy/orchestration/storenames.py:335
low System graph software Dead code conf 1.00 Possibly dead Python function: update_values
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
src/guppy/orchestration/storenames.py:362
low System graph quality Complexity conf 1.00 Very large file: docs/scripts/isosbestic_explainer.py (2048 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
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