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yusong652/yade-mcp

https://github.com/yusong652/yade-mcp · scanned 2026-06-16 01:09 UTC (2 months, 1 week ago)

44 raw signals (0 security + 44 graph)

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UNIFIED Repobility · multi-layer engine · AI coders

Complete repo analysis

Last scanned 2 months, 1 week ago · v1 · 41 actionable findings from 1 signal source. 3 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

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77.8% cov · 41 findings

Severity distribution — click a segment to filter

Active filters: excluding tests × Reset all

Severity: Critical 0 High 4 Medium 4 Low 20 9-Layer: Software Security Quality Integrity Frontend Hardware Data Network Cicd Source: Security checks 0 System graph 41 Crowd 0 Layer: Software 13 Hardware 3 Frontend 1 Security 4 Cicd 2 Quality 18

Exclude dismissed / FP Exclude test files

All 1394 nodes from the latest scan, grouped by kind. Each node is a unit the engine identified (file, function, endpoint, table…). Most users won't need this view — it's primarily for debugging the engine's graph extraction or for AI agents that want to enumerate the project structure.

Label	Layer	Status	Path
`_err`	software	healthy	`tests/conftest.py:19`
`_build_response`	software	healthy	`tests/conftest.py:34`
`log_message`	software	healthy	`tests/conftest.py:122`
`_send_json`	software	healthy	`tests/conftest.py:125`
`do_POST`	software	healthy	`tests/conftest.py:136`
`do_GET`	software	healthy	`tests/conftest.py:163`
`bridge_server`	software	healthy	`tests/conftest.py:185`
`_make_client`	software	healthy	`tests/test_bridge_client.py:19`
`test_connect_and_disconnect`	software	healthy	`tests/test_bridge_client.py:37`
`test_double_connect_is_noop`	software	healthy	`tests/test_bridge_client.py:47`
`test_disconnect_when_not_connected`	software	healthy	`tests/test_bridge_client.py:55`
`test_ensure_connected`	software	healthy	`tests/test_bridge_client.py:60`
`test_execute_code`	software	healthy	`tests/test_bridge_client.py:73`
`test_check_task_status_not_found`	software	healthy	`tests/test_bridge_client.py:80`
`test_list_tasks`	software	healthy	`tests/test_bridge_client.py:88`
`test_interrupt_nonexistent`	software	healthy	`tests/test_bridge_client.py:95`
`test_timeout_raises`	software	healthy	`tests/test_bridge_client.py:110`
`test_retry_on_failure`	software	healthy	`tests/test_bridge_client.py:122`
`flaky_send`	software	healthy	`tests/test_bridge_client.py:128`
`test_retry_exhausted`	software	healthy	`tests/test_bridge_client.py:141`
`always_fail`	software	healthy	`tests/test_bridge_client.py:144`
`test_get_and_close`	software	healthy	`tests/test_bridge_client.py:158`
`test_returns_eleven_top_level_categories`	software	healthy	`tests/test_loader.py:16`
`test_each_category_has_description_and_count`	software	healthy	`tests/test_loader.py:35`
`test_large_categories_have_top_level_nodes`	software	healthy	`tests/test_loader.py:41`
`test_get_root_node`	software	healthy	`tests/test_loader.py:60`
`test_get_nested_node`	software	healthy	`tests/test_loader.py:66`
`test_get_deep_node`	software	healthy	`tests/test_loader.py:73`
`test_nonexistent_category`	software	healthy	`tests/test_loader.py:195`
`test_nonexistent_node_in_valid_category`	software	healthy	`tests/test_loader.py:82`
`test_broken_mid_path`	software	healthy	`tests/test_loader.py:85`
`test_root_node_has_no_self_class`	software	healthy	`tests/test_loader.py:95`
`test_internal_node_surfaces_self_class`	software	healthy	`tests/test_loader.py:106`
`test_sub_trees_carry_descendant_count`	software	healthy	`tests/test_loader.py:114`
`test_leaf_entries_have_class_metadata`	software	healthy	`tests/test_loader.py:122`
`test_no_duplicate_between_children_and_leaves`	software	healthy	`tests/test_loader.py:132`
`test_empty_path_is_root`	software	healthy	`tests/test_loader.py:146`
`test_category_only`	software	healthy	`tests/test_loader.py:149`
`test_one_level_deep`	software	healthy	`tests/test_loader.py:155`
`test_two_levels_deep`	software	healthy	`tests/test_loader.py:160`
`test_leaf_class`	software	healthy	`tests/test_loader.py:165`
`test_functor_leaf`	software	healthy	`tests/test_loader.py:172`
`test_class_that_is_also_a_tree_node_resolves_as_tree_node`	software	healthy	`tests/test_loader.py:180`
`test_no_class_name_fallback`	software	healthy	`tests/test_loader.py:189`
`test_segment_after_leaf_is_error`	software	healthy	`tests/test_loader.py:200`
`test_leaf_class_returns_full_browse_path`	software	healthy	`tests/test_loader.py:211`
`test_tree_node_class_returns_valid_tree_path`	software	healthy	`tests/test_loader.py:215`
`test_unknown_class_returns_none`	software	healthy	`tests/test_loader.py:219`
`_load_doc`	software	healthy	`tests/test_loader.py:233`
`test_top_of_hierarchy_classes`	software	healthy	`tests/test_loader.py:236`

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

Label	Layer	Status	Path
`README.zh-CN.md`	software	healthy	`README.zh-CN.md`
`README.md`	software	healthy	`README.md`
`CLAUDE.md`	software	healthy	`CLAUDE.md`
`CONTRIBUTING.md`	software	healthy	`CONTRIBUTING.md`
`Dockerfile`	software	healthy	`Dockerfile`
`glama.json`	software	healthy	`glama.json`
`server.json`	software	healthy	`server.json`
`.env.example`	software	healthy	`.env.example`
`pyproject.toml`	software	healthy	`pyproject.toml`
`LICENSE`	software	healthy	`LICENSE`
`AGENTS.md`	software	healthy	`AGENTS.md`
`docker-compose.dev.yml`	software	healthy	`docker/docker-compose.dev.yml`
`run.sh`	software	healthy	`docker/run.sh`
`entrypoint.sh`	software	healthy	`docker/entrypoint.sh`
`conftest.py`	software	healthy	`tests/conftest.py`
`test_bridge_client.py`	software	healthy	`tests/test_bridge_client.py`
`test_loader.py`	software	healthy	`tests/test_loader.py`
`test_context_decorator.py`	software	healthy	`tests/test_context_decorator.py`
`test_formatting.py`	software	healthy	`tests/test_formatting.py`
`test_config.py`	software	healthy	`tests/test_config.py`
`test_tools_integration.py`	software	healthy	`tests/test_tools_integration.py`
`test_response_truncation.py`	software	healthy	`tests/test_response_truncation.py`
`test_contracts.py`	software	healthy	`tests/test_contracts.py`
`test_tools.py`	software	healthy	`tests/test_tools.py`
`test_search.py`	software	healthy	`tests/test_search.py`
`test_script_interrupt.py`	software	healthy	`tests/bridge/test_script_interrupt.py`
`__init__.py`	software	healthy	`tests/bridge/__init__.py`
`test_error_helper.py`	software	healthy	`tests/bridge/test_error_helper.py`
`test_helpers.py`	software	healthy	`tests/bridge/test_helpers.py`
`test_handlers.py`	software	healthy	`tests/bridge/test_handlers.py`
`test_utils.py`	software	healthy	`tests/bridge/test_utils.py`
`test_response_truncation.py`	software	healthy	`tests/bridge/test_response_truncation.py`
`test_protocol.py`	software	healthy	`tests/bridge/test_protocol.py`
`test_signals.py`	software	healthy	`tests/bridge/test_signals.py`
`test_termination.py`	software	healthy	`tests/bridge/test_termination.py`
`test_execution.py`	software	healthy	`tests/bridge/test_execution.py`
`test_tasks.py`	software	healthy	`tests/bridge/test_tasks.py`
`test_script_drain.py`	software	healthy	`tests/bridge/test_script_drain.py`
`triaxial_consolidation.py`	software	healthy	`showcase/triaxial/triaxial_consolidation.py`
`README.md`	software	healthy	`showcase/triaxial/README.md`
`triaxial_reequilibrate.py`	software	healthy	`showcase/triaxial/triaxial_reequilibrate.py`
`triaxial_drained_shear.py`	software	healthy	`showcase/triaxial/triaxial_drained_shear.py`
`yade-mcp-bootstrap-opencode.md`	software	healthy	`docs/agentic/yade-mcp-bootstrap-opencode.md`
`yade-mcp-bootstrap-toyoura-nagisa.md`	software	healthy	`docs/agentic/yade-mcp-bootstrap-toyoura-nagisa.md`
`yade-mcp-bootstrap-claude.md`	software	healthy	`docs/agentic/yade-mcp-bootstrap-claude.md`
`yade-mcp-bootstrap-copilot.md`	software	healthy	`docs/agentic/yade-mcp-bootstrap-copilot.md`
`yade-mcp-bootstrap-gemini.md`	software	healthy	`docs/agentic/yade-mcp-bootstrap-gemini.md`
`yade-mcp-bootstrap-codex.md`	software	healthy	`docs/agentic/yade-mcp-bootstrap-codex.md`
`yade-mcp-bootstrap.md`	software	healthy	`docs/agentic/yade-mcp-bootstrap.md`
`refresh_api_docs.py`	software	healthy	`scripts/refresh_api_docs.py`

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

Label	Layer	Status	Path
`_ThreadingHTTPServer`	software	healthy	`tests/conftest.py:107`
`_FakeBridgeHandler`	software	healthy	`tests/conftest.py:112`
`TestConnectionLifecycle`	software	healthy	`tests/test_bridge_client.py:36`
`TestRequests`	software	healthy	`tests/test_bridge_client.py:72`
`TestTimeoutAndRetry`	software	healthy	`tests/test_bridge_client.py:109`
`TestGlobalClient`	software	healthy	`tests/test_bridge_client.py:157`
`TestListCategories`	software	healthy	`tests/test_loader.py:15`
`TestTreeNavigation`	software	healthy	`tests/test_loader.py:59`
`TestListNodeContents`	software	healthy	`tests/test_loader.py:94`
`TestResolvePath`	software	healthy	`tests/test_loader.py:145`
`TestBuildBrowsePath`	software	healthy	`tests/test_loader.py:210`
`TestPatchedParentData`	software	healthy	`tests/test_loader.py:228`
`TestDescriptionCap`	software	healthy	`tests/test_loader.py:270`
`TestNormalizeStatus`	software	healthy	`tests/test_formatting.py:13`
`TestFormatUnixTimestamp`	software	healthy	`tests/test_formatting.py:25`
`TestRoundElapsedSeconds`	software	healthy	`tests/test_formatting.py:45`
`TestIsBridgeConnectivityError`	software	healthy	`tests/test_formatting.py:64`
`TestBuildBridgeError`	software	healthy	`tests/test_formatting.py:81`
`TestBuildOperationError`	software	healthy	`tests/test_formatting.py:100`
`TestBridgeConfig`	software	healthy	`tests/test_config.py:6`
`TestBrowseApi`	software	healthy	`tests/test_tools_integration.py:49`
`TestQueryApi`	software	healthy	`tests/test_tools_integration.py:78`
`TestExecuteCode`	software	healthy	`tests/test_tools_integration.py:101`
`TestExecuteTask`	software	healthy	`tests/test_tools_integration.py:147`
`TestListTasks`	software	healthy	`tests/test_tools_integration.py:187`
`TestInterruptTask`	software	healthy	`tests/test_tools_integration.py:197`
`TestCheckTaskStatus`	software	healthy	`tests/test_tools_integration.py:209`
`TestBridgeResponseTooLargeError`	software	healthy	`tests/test_response_truncation.py:8`
`TestBuildOk`	software	healthy	`tests/test_contracts.py:13`
`TestBuildError`	software	healthy	`tests/test_contracts.py:37`
`TestBuildDocsData`	software	healthy	`tests/test_contracts.py:57`
`TestSizeEnforcement`	software	healthy	`tests/test_contracts.py:78`
`TestExecuteCode`	software	healthy	`tests/test_tools.py:67`
`TestExecuteTask`	software	healthy	`tests/test_tools.py:122`
`TestCheckTaskStatus`	software	healthy	`tests/test_tools.py:177`
`TestListTasks`	software	healthy	`tests/test_tools.py:257`
`TestInterruptTask`	software	healthy	`tests/test_tools.py:310`
`TestTextTokenizer`	software	healthy	`tests/test_search.py:23`
`TestSearchDocument`	software	healthy	`tests/test_search.py:70`
`TestBM25Indexer`	software	healthy	`tests/test_search.py:89`
`TestBM25Scorer`	software	healthy	`tests/test_search.py:141`
`TestAPISearch`	software	healthy	`tests/test_search.py:205`
`TestTaskInterrupt`	software	healthy	`tests/bridge/test_script_interrupt.py:58`
`TestRegistryLifecycle`	software	healthy	`tests/bridge/test_script_interrupt.py:118`
`TestRequireField`	software	healthy	`tests/bridge/test_helpers.py:6`
`TestTruncateMessage`	software	healthy	`tests/bridge/test_helpers.py:31`
`TestHandleCheckTaskStatus`	software	healthy	`tests/bridge/test_handlers.py:46`
`TestHandleListTasks`	software	healthy	`tests/bridge/test_handlers.py:97`
`TestHandleInterruptTask`	software	healthy	`tests/bridge/test_handlers.py:126`
`_FakeDummy`	software	healthy	`tests/bridge/test_handlers.py:377`

Showing first 50 of this kind. Full payload available via the JSON button at the top of the page.

Label	Layer	Status	Path
`docker`	software	healthy	`docker`
`tests`	software	healthy	`tests`
`bridge`	software	healthy	`tests/bridge`
`showcase`	software	healthy	`showcase`
`triaxial`	software	healthy	`showcase/triaxial`
`docs`	software	healthy	`docs`
`agentic`	software	healthy	`docs/agentic`
`scripts`	software	healthy	`scripts`
`yade-mcp-bridge`	software	healthy	`yade-mcp-bridge`
`src`	software	healthy	`yade-mcp-bridge/src`
`yade_mcp_bridge`	software	healthy	`yade-mcp-bridge/src/yade_mcp_bridge`
`utils`	software	healthy	`yade-mcp-bridge/src/yade_mcp_bridge/utils`
`tasks`	software	healthy	`yade-mcp-bridge/src/yade_mcp_bridge/tasks`
`transport`	software	healthy	`yade-mcp-bridge/src/yade_mcp_bridge/transport`
`execution`	software	healthy	`yade-mcp-bridge/src/yade_mcp_bridge/execution`
`runtime`	software	healthy	`yade-mcp-bridge/src/yade_mcp_bridge/runtime`
`console`	software	healthy	`yade-mcp-bridge/src/yade_mcp_bridge/console`
`handlers`	software	healthy	`yade-mcp-bridge/src/yade_mcp_bridge/handlers`
`.github`	software	healthy	`.github`
`workflows`	software	healthy	`.github/workflows`
`src`	software	healthy	`src`
`yade_mcp`	software	healthy	`src/yade_mcp`
`tools`	software	healthy	`src/yade_mcp/tools`
`bridge`	software	healthy	`src/yade_mcp/bridge`
`knowledge`	software	healthy	`src/yade_mcp/knowledge`
`resources`	software	healthy	`src/yade_mcp/knowledge/resources`
`python_api_docs`	software	healthy	`src/yade_mcp/knowledge/resources/python_api_docs`
`functor`	software	healthy	`src/yade_mcp/knowledge/resources/python_api_docs/functor`
`state`	software	healthy	`src/yade_mcp/knowledge/resources/python_api_docs/state`
`bound`	software	healthy	`src/yade_mcp/knowledge/resources/python_api_docs/bound`
`body`	software	healthy	`src/yade_mcp/knowledge/resources/python_api_docs/body`
`runtime`	software	healthy	`src/yade_mcp/knowledge/resources/python_api_docs/runtime`
`material`	software	healthy	`src/yade_mcp/knowledge/resources/python_api_docs/material`
`engine`	software	healthy	`src/yade_mcp/knowledge/resources/python_api_docs/engine`
`misc`	software	healthy	`src/yade_mcp/knowledge/resources/python_api_docs/misc`
`shape`	software	healthy	`src/yade_mcp/knowledge/resources/python_api_docs/shape`
`iphys`	software	healthy	`src/yade_mcp/knowledge/resources/python_api_docs/iphys`
`igeom`	software	healthy	`src/yade_mcp/knowledge/resources/python_api_docs/igeom`
`search`	software	healthy	`src/yade_mcp/knowledge/search`
`preprocessing`	software	healthy	`src/yade_mcp/knowledge/search/preprocessing`
`indexing`	software	healthy	`src/yade_mcp/knowledge/search/indexing`
`scoring`	software	healthy	`src/yade_mcp/knowledge/search/scoring`

Label	Layer	Status	Path
`publish`	cicd	healthy	`.github/workflows/release-bridge.yml`
`lint`	cicd	healthy	`.github/workflows/ci.yml`
`lint`	cicd	healthy	`.github/workflows/release.yml`
`publish`	cicd	healthy	`.github/workflows/release.yml`

Label	Layer	Status	Path
`port:9002`	network	healthy	`docker/docker-compose.dev.yml`
`port:6080`	network	healthy	`docker/docker-compose.dev.yml`
`port:9003`	network	healthy	`yade-mcp-bridge/README.md`

Label	Layer	Status	Path
`gha::release-bridge`	cicd	healthy	`.github/workflows/release-bridge.yml`
`gha::ci`	cicd	healthy	`.github/workflows/ci.yml`
`gha::release`	cicd	healthy	`.github/workflows/release.yml`

Label	Layer	Status	Path
`auth::AGENTS.md`	security	healthy	`AGENTS.md`
`auth::CLAUDE.md`	security	healthy	`CLAUDE.md`

Label	Layer	Status	Path
`repobility-clone-skps9vsd`	software	healthy	`/tmp/repobility-clone-skps9vsd`

Label	Layer	Status	Path
`127.0.0.1`	network	healthy	`tests/conftest.py`

Label	Layer	Status	Path
`image::Dockerfile`	hardware	healthy	`Dockerfile`

Label	Layer	Status	Path
`gpu (detected)`	hardware	healthy	`docker/entrypoint.sh`

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yusong652/yade-mcp

Complete repo analysis

function 50+

file 50+

class 50+

directory 42

job 4

port 3

pipeline 3

auth 2

repo 1

service 1

container 1

gpu 1