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Vis-42/Vis-42.github.io

https://github.com/Vis-42/Vis-42.github.io · scanned 2026-06-16 00:52 UTC (2 months, 1 week ago)

53 raw signals (0 security + 53 graph)

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UNIFIED Repobility · multi-layer engine · AI coders

Complete repo analysis

Last scanned 2 months, 1 week ago · v1 · 42 actionable findings from 1 signal source. 11 repeated signals grouped for readability. Security checks, system graph analysis, and verified AI-agent feedback are merged into one review queue.

JSON
Combined
65.2
/100
Security checks
65
0 findings
System graph
65
77.8% cov · 42 findings
Critical
0
click to filter
Agents
10
0 votes
Crowd
0
reported
Severity distribution — click a segment to filter
Active filters: excluding tests × Reset all
Severity: Critical 0 High 1 Medium 5 Low 31 9-Layer: Software Security Quality Integrity Frontend Hardware Data Network Cicd Source: Security checks 0 System graph 42 Crowd 0 Layer: Software 21 Hardware 2 Frontend 1 Security 2 Cicd 3 Quality 13
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Scan summary Repository scanned at 65.2/100 with 77.8% coverage. It contains 693 nodes across 0 cross-layer flows, written primarily in mixed languages. Engine surfaced 53 findings — concentrated in quality (22), software (21), cicd (5). Risk profile is high: 0 critical, 1 high, 5 medium. Recommended next step: open the quality layer findings first — that's where the highest-impact wins live.

Showing 36 of 42 actionable findings. 53 raw detector signals were grouped into reader-sized issues. Click TP / FP to vote on a finding's accuracy — votes adjust the confidence weighting and improve detection across the platform.

high System graph security Secrets conf 1.00 Runtime dotenv file present in repo: py/.env
`py/.env` looks like a runtime dotenv file. No high-confidence secret value was matched, but runtime dotenv files often drift into live credentials. Move real values to a secret manager and keep only `.env.example` style templates in source control.
py/.env ConfigEnv fileRuntime env
medium System graph quality Tests conf 1.00 CI is configured but no tests are detected
A CI pipeline exists, but the scan found no test files to gate. Opus labeled this generated-code pattern as config theater: release machinery exists, but it has little behavioral signal.
CI/CDConfig theaterRepo hardening
medium System graph cicd CI/CD security conf 1.00 GitHub Action is tag-pinned rather than SHA-pinned
peaceiris/actions-hugo@v2 can move without a code change in this repo. Pin third-party actions to a reviewed 40-character commit SHA.
.github/workflows/deploy.yml:38 CI/CD securitySupply chainGithub actions
medium System graph cicd CI/CD security conf 1.00 GitHub Actions workflow grants broad write permissions
CI tokens with write permissions increase blast radius when an action, dependency, or PR workflow is compromised. Prefer job-level least-privilege permissions.
.github/workflows/deploy.yml CI/CD securitySupply chainGithub actions
medium System graph security Coverage conf 1.00 No auth library detected
The scanner did not find any standard auth library (JWT, OAuth, NextAuth, Auth0, etc.). The repo has auth/admin/session surface indicators, so auth may live in custom code, in a separate service, or be missing.
auth
medium System graph quality Tests conf 1.00 Very low test-to-source ratio
0 test file(s) for 79 source file(s) (ratio 0.00). Consider adding integration or unit tests for critical paths.
Coverage
low System graph hardware Coverage conf 1.00 Containers defined but no K8s/orchestration manifest found
Repo has Dockerfiles/compose but no Kubernetes/Nomad manifests. If the target deployment is K8s, the manifests may live in a separate ops repo.
Deployment
low System graph quality Debug conf 1.00 Debug logging residue appears in source files
Found 586 console/debugger/print-style debug statements in non-test source. This is a common fast-generation residue before production cleanup.
CleanupRepo hardeningGenerated repo pattern
low System graph hardware Supply chain conf 1.00 Docker base image is tag-pinned but not digest-pinned: julia:1.11-bookworm
Container tags can be retagged upstream. Pin production base images to a reviewed digest (`image@sha256:...`) when reproducibility and supply-chain integrity matter.
slider-server/Dockerfile:4 containersPinned dependencies
low System graph cicd CI/CD security conf 1.00 3 occurrences GitHub Action is tag-pinned rather than SHA-pinned
actions/checkout@v4 can move without a code change in this repo. Pin third-party actions to a reviewed 40-character commit SHA.
lines 33, 51, 64
.github/workflows/deploy.yml:33, 51, 64 (3 hits)
CI/CD securitySupply chainGithub actions
low System graph quality Integrity conf 1.00 8 occurrences Near-duplicate function bodies in 2 places
Functions with the same first-5-line body hash: manuscripts/typst/raman/scripts/analyze_raman.py:read_spectrum, manuscripts/typst/raman/scripts/quantitative_analysis.py:read_spectrum This is *the* AI-coder failure mode (4× more duplication in vibe-coded repos — see https://jw.hn/ai-code-hygiene). …
8 occurrences
repo-level (8 hits)
duplicatesduplication
low System graph quality Integrity conf 1.00 3 occurrences Near-duplicate function bodies in 3 places
Functions with the same first-5-line body hash: manuscripts/typst/magnetic_moment/scripts/mm_enhanced_analysis.py:to_float, manuscripts/typst/magnetic_moment/scripts/mm_analysis.py:to_float, manuscripts/typst/magnetic_moment/scripts/mm_corrected_analysis.py:to_float This is *the* AI-coder failure …
3 occurrences
repo-level (3 hits)
duplicatesduplication
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `E_old` in py/protein_landscape/monte_carlo.py:23
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph quality Integrity conf 1.00 Old/deprecated-named symbol `tag_v2` in manuscripts/typst/bio-microscopy/scripts/process_images.py:73
Names with suffixes like `_old`, `_v1`, `_deprecated` usually indicate replaced-but-not-removed code (typical AI-coder leftover). Confirm and delete, or rename if it's the active version.
old markerDead code
low System graph software Dead code conf 1.00 Possibly dead Python function: add_noise
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
py/cd_inversion/cd_forward_model.py:26
low System graph software Dead code conf 1.00 Possibly dead Python function: band_ratio
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
manuscripts/typst/raman/scripts/analyze_raman.py:130
low System graph software Dead code conf 1.00 Possibly dead Python function: collect_peaks_and_errors
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
py/randomLabs/neon_data_anal.py:13
low System graph software Dead code conf 1.00 Possibly dead Python function: construct
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
py/manim/Projects/a1.py:4
low System graph software Dead code conf 1.00 Possibly dead Python function: decode_your_1010s_grade
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
py/coursework/missions/mission03-template.py:281
low System graph software Dead code conf 1.00 Possibly dead Python function: derivs
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
manuscripts/typst/pc3236/scripts/quadruple_pendulum.py:120
low System graph software Dead code conf 1.00 Possibly dead Python function: drawer_load
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
py/coursework/missions/m3_images.py:382
low System graph software Dead code conf 1.00 Possibly dead Python function: F
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
manuscripts/typst/assignments/scripts/plot_therm11_bec.py:39
low System graph software Dead code conf 1.00 Possibly dead Python function: fit_dg
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
manuscripts/typst/raman/scripts/analyze_dlc.py:167
low System graph software Dead code conf 1.00 Possibly dead Python function: ig
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
manuscripts/typst/assignments/scripts/verify_therm11.py:153
low System graph software Dead code conf 1.00 Possibly dead Python function: integrand
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
manuscripts/typst/assignments/scripts/plot_therm11_bec.py:21
low System graph software Dead code conf 1.00 Possibly dead Python function: lorentzian
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
manuscripts/typst/raman/scripts/quantitative_analysis.py:36
low System graph software Dead code conf 1.00 Possibly dead Python function: make_checkerboard
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
py/spin_glass_nn/data_generation.py:28
low System graph software Dead code conf 1.00 Possibly dead Python function: make_xor
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
py/spin_glass_nn/data_generation.py:21
low System graph software Dead code conf 1.00 Possibly dead Python function: mean_and_stderr
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
py/v4.py:28
low System graph software Dead code conf 1.00 Possibly dead Python function: quadratic_func
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
manuscripts/typst/hall_effect/scripts/hall_effect_analysis.py:133
low System graph software Dead code conf 1.00 Possibly dead Python function: radius_of_gyration
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
py/protein_landscape/go_model.py:77
low System graph software Dead code conf 1.00 Possibly dead Python function: save_all
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
py/coursework/missions/mission03-template.py:257
low System graph software Dead code conf 1.00 Possibly dead Python function: two_gaussians
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
manuscripts/typst/raman/scripts/analyze_dlc.py:163
low System graph software Dead code conf 1.00 Possibly dead Python function: wham_simple
No callers detected by AST scan in this repo. Could be exported for external callers or a framework handler.
py/protein_landscape/free_energy.py:22
low System graph quality Provenance conf 1.00 Shallow git history limits provenance confidence
The repository is a shallow clone. Origin/evolution analysis cannot distinguish fresh generation, imported legacy code, or long-lived human code with high confidence.
Git historyGenerated repo pattern
low System graph quality Complexity conf 1.00 Very large file: py/coursework/missions/m3_images.py (7335 lines)
Files with >800 lines often hide complexity hotspots and discourage tests.
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